Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq72 192 7e-44 seq82 170 2e-37 seq66 154 2e-32 seq89 140 4e-28 seq74 123 3e-23 >seq72 Length=85273 Score = 192 bits (212), Expect = 7e-44 Identities = 372/542 (69%), Gaps = 14/542 (3%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAAT-CGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 ||| ||||||||| |||| |||| |||| |||||| || || ||| || ||||||||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | || ||||| || || | |||||| | ||||||||||||| || || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474 || || || ||||||||||| |||||||| || | || | || | || || || | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGC--AAACGAAGCAG 75795 Query 33475 -----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33529 ||| ||||| || ||||||| | ||| ||||| | | ||| || || || Sbjct 75796 AAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 75852 Query 33530 CTATGGCATTAAAG-AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 | || || | |||| | | ||||| | | |||| | | ||| || ||||| | Sbjct 75853 CCATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 75912 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||||| Sbjct 75913 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 75972 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCG 33708 || || | ||| || || || || ||||| ||| || | ||| || || || || Sbjct 75973 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCA 76031 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33768 || || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 76032 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAAC 76091 Query 33769 TTATTCCAATCATTGATATCTTTAGATATATC-TACTTCTTCCACTGTCCAAAATGATGC 33827 || |||||||| | | ||| || | || | |||||| | ||||||||||| || Sbjct 76092 TTTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 Query 33828 CT 33829 || Sbjct 76152 CT 76153 >seq82 Length=95658 Score = 170 bits (188), Expect = 2e-37 Identities = 369/543 (68%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| ||||||||| || ||||| |||| |||||| || || ||| || |||||||||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA-TCCA 33414 | || | || ||||| || || | |||| | ||||||||||||| || || ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 33415 GAAAAGAAGATTCCTTCTA-CTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 33473 || || || |||||||||| | |||||||| || | || | || || | || || Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAA--CGAAGCA 94583 Query 33474 G-----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTT 33528 | ||| ||||| || ||||||| | ||| ||||| | | ||| || || | Sbjct 94582 GAAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 94526 Query 33529 TCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAA 33588 || || || | ||| | | ||||| | | |||| | | ||| || ||||| | Sbjct 94525 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 94466 Query 33589 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTA 33648 ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||||| Sbjct 94465 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 94406 Query 33649 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATT-TTCATTCACTATTCC 33707 || || | ||| || || || || ||||| ||| || | ||| | | || || || Sbjct 94405 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATACC 94347 Query 33708 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33767 || || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 94346 ATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAA 94287 Query 33768 TTTATTCCAATCATTGATATC-TTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826 || |||||||| | | ||| || | || | |||||| | ||||||||||| | Sbjct 94286 CTTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAG 94227 Query 33827 CCT 33829 ||| Sbjct 94226 CCT 94224 >seq66 Length=178311 Score = 154 bits (170), Expect = 2e-32 Identities = 370/549 (67%), Gaps = 27/549 (5%) Strand=Plus/Minus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTA------CTAATTAGTTCGTTGGA 33353 ||||||||| |||||||| |||| |||||| || || | || || ||||||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAG--CGTTGGA 8331 Query 33354 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG-GAAGCGAATGATC 33412 ||| || | || ||||| || || | |||||| | |||||||||| ||| || || | Sbjct 8330 AAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAAC 8271 Query 33413 CAGAAAAGAAGATTCC-TTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG 33471 | || || || ||||| ||| || ||||||||| | | || | || || | || | Sbjct 8270 CCGAGAAAAATATTCCCTTCAACCGCAGCAAAG-CTACCAGACGTTCAGCAAA--CGAAG 8214 Query 33472 CTG-----TCATGTATCCACTTTT--GAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33524 | | ||| ||||| || | ||||||| | ||| ||||| | | ||| || || Sbjct 8213 CAGAAGACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAAT 8157 Query 33525 CGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGAT 33584 ||| || || | ||| | | ||||| | | |||| | | ||| || ||||| Sbjct 8156 TCGTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGAT 8097 Query 33585 CAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACA 33644 | ||| |||| |||| ||||| || ||||| || || ||||||||||| |||||||| Sbjct 8096 AAGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACA 8037 Query 33645 TCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTAT 33704 || || || | ||| || || || |||||||| ||| || | ||| || || || Sbjct 8036 TCGTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGAT 7977 Query 33705 TCCGT-CACT--GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGG 33761 || | | || || ||||| || ||||||||||| ||||| | ||| |||| Sbjct 7976 ACCATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGC 7917 Query 33762 TGT-TAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAA 33820 || | ||| ||||| || | | ||| || | || | |||||| | ||||||| Sbjct 7916 AGTCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAA 7857 Query 33821 ATGATGCCT 33829 |||| |||| Sbjct 7856 ATGAAGCCT 7848 >seq89 Length=114172 Score = 140 bits (154), Expect = 4e-28 Identities = 347/519 (67%), Gaps = 16/519 (3%) Strand=Plus/Plus Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 || |||||||| || ||||| ||||| | || || || || | ||||||||||||| | Sbjct 97008 TCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CA 97066 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || || ||||||||||| || ||||| || || ||||| |||| || | ||| || || Sbjct 97067 AAAGAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAA 97126 Query 33466 CCG-GCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCAT 33524 | | | | | ||||| || | |||||| |||||||||| || || || | Sbjct 97127 CTATGAGAACACTCGAATCCATTTCAACGACCAATCCGCCTTCTTTTC-ACGCAGGGAAG 97185 Query 33525 CGTTTCTATGGCATTAAAGAG---ATAGtttttttCATTACTATCTTTAACATAAGTATC 33581 |||| |||||| || || | |||| ||| || ||| || ||| || || Sbjct 97186 GTTTTCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACACC-TCTCGAATATACGTGTC 97244 Query 33582 GATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAA 33641 |||| | |||||||||||| || | ||||| || |||| ||||| || || || Sbjct 97245 TATCAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAA 97304 Query 33642 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCAC 33701 ||| | || |||| | |||||||| || | || || | ||||| ||||||||||| Sbjct 97305 ACAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCAC 97364 Query 33702 TATTCCGTCACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---- 33755 || || | | | || ||||| || ||||| || || ||| || | | ||| Sbjct 97365 GATGCCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAA 97424 Query 33756 GTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGT 33815 | ||| | | | | |||||| | |||| ||| | || |||||||| ||||| Sbjct 97425 GCCTGAAGCGAAT---TCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGT 97481 Query 33816 CCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGAT 33854 ||| || || ||||| ||| |||| | |||||| Sbjct 97482 CCAGAAACTAGCTTCTGCACGTTTGTACAATTCCCAGAT 97520 >seq74 Length=163707 Score = 123 bits (136), Expect = 3e-23 Identities = 472/728 (65%), Gaps = 20/728 (3%) Strand=Plus/Plus Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 ||| | | |||| || | ||||||||| || ||||||| ||| ||||| ||||| Sbjct 151657 ATAAAGTTGTTCAAAAGCTTCTCCCCAACAATCTGCCAATCCTGGAGCTTCATTGGGACA 151716 Query 63188 CATCAACGACCACTCTCCGTCATCCTTC-ACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 | || ||||| | | || || ||| ||||| |||||||| | ||| |||| ||| | Sbjct 151717 AAATAAACTCCACTTTTCATC-TCTTTCTACTCGCTTCATAAACAAATCGGGAACCCATA 151775 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 | | ||||| ||||| | || || || || ||||| ||||||| | | ||| | Sbjct 151776 AACCATAAAATAAATCTCGTGCTCGATTCTCTTCCTTTCCATGATTCTTTCTCAAATCTA 151835 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 ||| | | | || | |||||| || ||||| || || || | | |||| | | Sbjct 151836 AAAACTCAAAATGGTCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTCT 151895 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG-AATA 63425 | |||||| ||||| | ||||| || || | |||| | |||| | ||| || || | Sbjct 151896 TTCCTCCTCCTTGATCGACATATCTCGCAGTATCATTAAATACTCGAAGCATAGGGAACA 151955 Query 63426 ATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTA 63485 || || || || | ||||||||||| ||||| | | || ||||| | | Sbjct 151956 ATGCCATTGGAAGTTCCATTGGTACCTCGAATATACGATTTGGTAGCTCGAATGTCGTGA 152015 Query 63486 ATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCA 63545 | || | || || || || || ||||||| || | || || | || || || ||| Sbjct 152016 ACTGCCAATCCAATACCGCCAGCACTTTTAGAAATCACAGCACAGCTCTTCAAAGTATCA 152075 Query 63546 TAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGA 63605 || || || || || || || |||| | || | ||||| ||| | || | Sbjct 152076 TAAATGCCTTCAATAGAGTCTTCCGTCATAGTGAGCAAGAAACAAGAAGATAACTGAGGT 152135 Query 63606 CGACTAGTTCCCGCA-TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAG--AA 63662 ||| || || ||| || || || || || ||||| |||||||| ||||| || || Sbjct 152136 CGAGGTGTACCGGCATTTGAACAAAGTGGGCGAAGCATGCGTAAAATATTTTCGAGACAA 152195 Query 63663 AGTAGATTGTACGTCT-CAATAGCTGAGTCTATATC---CCATTGATGAATTCCTACTGC 63718 ||| || || |||| ||||| | | || | || || ||| ||||| ||||| || Sbjct 152196 TGTA-ATCATAAGTCTCCAATA-CAGCTTCCAAGTCCAGCCCTTG-TGAATACCTACAGC 152252 Query 63719 GACAC------GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 | || || | ||||| || |||| ||| || | ||| | | | ||| Sbjct 152253 GCAACTCTCGGGCCAACATATGTGTTGGGGTCGTTCCACTACTTTGCCATCCACTCGCAA 152312 Query 63773 -CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGT 63831 || |||| ||||| || || || ||||| || | || ||||||||||| || | Sbjct 152313 GCACTGAGGAACGCTCCAACGTCTTGAACCCAAAGTAATCATAGGAAAAGTCTCGATCAT 152372 Query 63832 AAATAATA 63839 |||||||| Sbjct 152373 AAATAATA 152380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946288939720