Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq74 170 5e-37 seq89 93.3 1e-13 seq82 89.7 1e-12 seq72 87.8 5e-12 >seq74 Length=163707 Score = 170 bits (188), Expect = 5e-37 Identities = 376/551 (68%), Gaps = 12/551 (2%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAA-TGCTGGAACTCGTAATCCACAGATGTCTTC 363605 || ||||| || |||| || ||| ||| ||| || || | | || ||| | ||||| Sbjct 152180 TTTACGCATGCTTCGCCCACTTTGTTCAAATGCCGGTACACCTCGACCTCAGTTATCTTC 152121 Query 363606 TTGCTTTCTT-CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGA 363664 ||| |||||| || | |||| ||| || || || || || || | ||| || | |||| Sbjct 152120 TTG-TTTCTTGCTCACTATGACGGAAGACTCTATTGAAGGCATTTATGATACTTTGAAGA 152062 Query 363665 ATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG 363724 |||||| | ||||| || | ||| ||||| ||||| | | | ||| | |||| | Sbjct 152061 GCTGTGCTGTGATTTCTAAAAGTGCTGGCGGTATTGGATTGGCAGTTCACGACATTCGAG 152002 Query 363725 C-ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCC-ATGCT 363782 | || || || | ||||| || || ||| || ||||| | |||||| ||||| Sbjct 152001 CTACCAAATCGT-ATATTCGAGGTACCAATGGAACTTCCAATGGCATTGTTCCCTATGCT 151943 Query 363783 TCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGC 363842 ||| || ||| | |||||||||| || ||||| || || ||||||||| | ||||| || Sbjct 151942 TCGAGTATTTAATGATACTGCGAGATATGTCGATCAAGGAGGAGGAAAGAGAAAAGGAGC 151883 Query 363843 GTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAA 363902 |||||||| ||| | |||||| |||||||| |||||||||| | || | | || Sbjct 151882 TTTTGCTATTTATTTGGAGCCTTGGCATGCCGACCATTTTGAGTTTTTAGATTTGAGAAA 151823 Query 363903 AAA-CACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTC 363959 || || || || ||||| ||| || ||||| ||| | || |||| | |||||| | Sbjct 151822 GAATCATGGAAAGGAAGAG-AAT--CGAGCACGAGATTTATTTTATGGTTTATGGGTTCC 151766 Query 363960 TGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 || ||||||||||| || || || | | || ||| | ||||| || | || Sbjct 151765 CGATTTGTTTATGAAGCGAGTAGAAAGAGATGAAAAGTGGAGTTTATTTTGTCCCAATGA 151706 Query 364020 ATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA 364079 | |||||| | | ||| ||||| || | | || || || ||||||||||| Sbjct 151705 AGCTCCAGGATTGGCAGATTGTTGGGGAGAAGCTTTTGAACAACTTTATGAAAAGTATGA 151646 Query 364080 ATCGGAGGGAA 364090 | ||||| || Sbjct 151645 AAAGGAGGTAA 151635 >seq89 Length=114172 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/210 (71%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCAT----TCGCGGAACG 22493 || ||||| |||||| || |||||||||| | || | |||| | || || || Sbjct 97171 AAGAAGGCGGATTGGTCGTTGAAATGGATTCG-AGTGTTC--TCATAGTTTTGCCGAGCG 97115 Query 22494 TCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTT 22553 ||| |||| ||||| | ||| ||||| || ||||||||||| | |||||| | || || Sbjct 97114 TCTGGTTGCTTTTGCAGCGGTCGAAGGGATATTCTTTTCTGGTTC-TTTTGTTCCATATT 97056 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||| | || ||||| | | ||||| || || || ||||| |||||||| || || Sbjct 97055 TTGGTTGAAGAAACGGGGGTTGATGCCTGGACTGACCTTTTCCAATGAGTTGATATCACG 96996 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTG 22643 |||||| || | ||| || ||||| || Sbjct 96995 AGATGAAGGCTTGCATTGTGAATTTGCTTG 96966 >seq82 Length=95658 Score = 89.7 bits (98), Expect = 1e-12 Identities = 156/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Plus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAA 22491 ||| |||| || || | ||||| ||||||||||| | | ||| || || ||| Sbjct 94539 ATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCTTCTGCTTCGTTTGCTGAA 94598 Query 22492 CGTCTTATTGCATTTGCTGTGGTT-GAAGGCATTTTCTTTTCTGGA-GCATTTTGTGCAA 22549 ||||| | |||||||||| |||| ||||| || || || || ||| | |||||| | | Sbjct 94599 CGTCTGGTAGCATTTGCTGCGGTTAGAAGGAATATTTTTCTCGGGATTCCTTTTGTTCCA 94658 Query 22550 TCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTA 22609 | |||||| | |||| | || | ||||| || | || ||||| || ||| | ||| Sbjct 94659 TATTTTGGTTGAAAAGAGGT---CTCATGCCAGGCTTGACATTTTCCAACGAGCTGATTT 94715 Query 22610 GCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATAT 22653 | ||||||||| | ||| ||| ||||| ||| || | ||| Sbjct 94716 CAAGGGATGAGGGTTTGCATTGCGAATTTGCATGTTTGTTGTAT 94759 >seq72 Length=85273 Score = 87.8 bits (96), Expect = 5e-12 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAA 22491 ||| |||| || || | ||||| ||||||||||| | | ||| || || ||| Sbjct 75838 ATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCTTCTGCTTCGTTTGCTGAA 75779 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||||| | || ||||||| ||| ||||| || || || || || | |||||| | || Sbjct 75778 CGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCGGGTTCCTTTTGTTCCATA 75719 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||| | ||||| | | | ||||| || | || ||||| || ||| | ||| Sbjct 75718 TTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAACGAGCTGATTTCA 75659 Query 22612 CGAGATGAGGGTCTTCATACCG-ATTTTGCGTGTATGCTATAT 22653 | ||||||||| | ||| || ||||||| ||| || | ||| Sbjct 75658 AGGGATGAGGGTTTGCATTGCGAATTTTGCATGTTTGTTGTAT 75616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303351646191494