Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq43 116 2e-21 seq103 104 2e-17 seq36 84.2 1e-11 >seq43 Length=27552 Score = 116 bits (128), Expect = 2e-21 Identities = 88/104 (85%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 25893 GTTTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GG 25947 ||||||| ||| |||||||||||||||||| ||||||||| | | |||||| || Sbjct 15417 GTTTATACCAAGACCGTTCCCTTGGCTGTGGGTTCGCTAGAAGGAAAATAGGGACAGTGG 15358 Query 25948 TAATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||||| |||| |||||||||||||||||||||||||||| Sbjct 15357 GAATCTCGTTGATCCATTCATGCGCGTCACTAATTAGATGACGA 15314 Score = 98.7 bits (108), Expect = 7e-16 Identities = 69/78 (88%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||| || |||||||||||||||||||||||||||||||||| | Sbjct 13226 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 13167 Query 20007 GGTA--ATATTTAGCCTT 20022 || ||||||||||| Sbjct 13166 TTTACGGTATTTAGCCTT 13149 >seq103 Length=203287 Score = 104 bits (114), Expect = 2e-17 Identities = 168/240 (70%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || || || | ||| ||||| || | ||| |||||||||||||| || || | Sbjct 14158 TACCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCG 14217 Query 38149 ACAAAACACGTTCGTCGTCTAATTG--TTTTCCGGCAAATATTAGGCGTTGTTGATCGGA 38206 ||| | | | |||| || | ||| ||| || |||||||| || | ||||||||| | Sbjct 14218 ACAGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGG 14277 Query 38207 GGGGACGCCTTCTTTGTCCATAATTTTTTG-CTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | |||||||| || || | |||| |||||||| | | |||||| | || Sbjct 14278 GGGTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTT 14337 Query 38266 CAACTTCTAATG-------TAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | || ||||| | || | || || || ||||| |||||||| ||||| |||||| Sbjct 14338 CGACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCATG 14397 >seq36 Length=139094 Score = 84.2 bits (92), Expect = 1e-11 Identities = 174/249 (70%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||| || | Sbjct 92192 CATT-CCACC-CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGT 92249 Query 38146 CAGACAAAACACGTTCGTCGTCTAA-TTGTTTTCCGGCAAATAT-TAGGCGTTGTTGATC 38203 | || | | ||| | || ||||| ||| ||||| |||||||| | ||||| || || Sbjct 92250 CTGAAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTC 92309 Query 38204 GGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACA-TTCTGGACAGTATCTCCAC 38262 | || | ||||| ||||| || || ||| ||| |||| | ||||||| | Sbjct 92310 TGGAGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAG 92369 Query 38263 TTTCAACTTCTAATGT--AA--TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| | || || || || || || | || || || ||||||||||| Sbjct 92370 GCTCCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCAT- 92428 Query 38319 TTTTACAAG 38327 | || |||| Sbjct 92429 TCTTTCAAG 92437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946722386227