Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq72 174 2e-38 seq82 152 7e-32 seq66 138 1e-27 seq89 136 5e-27 >seq72 Length=85273 Score = 174 bits (192), Expect = 2e-38 Identities = 368/542 (68%), Gaps = 14/542 (3%) Strand=Plus/Plus Query 32653 ACATCAAACATGCGAAAT-CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 ||| ||||||||| |||| |||| || | |||||| || || ||| | ||||||||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | || ||||| || || | |||||| | |||||||||||| ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 32831 || || || ||||||||||| || ||||| || | || | || | || || || | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGC--AAACGAAGCAG 75795 Query 32832 -----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 ||| ||||| || ||||||| | ||| ||||| | | ||| || ||| | Sbjct 75796 AAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 75852 Query 32887 CTATAGCATTAAAG-AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 | || || | |||| | | ||||| | | |||| | | |||||| || || | Sbjct 75853 CCATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 75912 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 ||| |||| |||| ||||| || ||||| || || || |||||||| ||||| |||| Sbjct 75913 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 75972 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 33065 || || | ||| || || || || ||||| |||||| | ||| || || || || Sbjct 75973 GCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACCA 76031 Query 33066 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 33125 || || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 76032 TCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAAC 76091 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATC-CACTTCTTCCACTGTCCAAAATGATGC 33184 || |||||||| | | ||| || | || | |||||| | ||||||||||| || Sbjct 76092 TTTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAGC 76151 Query 33185 CT 33186 || Sbjct 76152 CT 76153 >seq82 Length=95658 Score = 152 bits (168), Expect = 7e-32 Identities = 365/543 (67%), Gaps = 18/543 (3%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||||||||| || ||||| || | |||||| || || ||| | |||||||||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA-TCCA 32771 | || | || ||||| || || | |||| | |||||||||||| ||| || ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTC---TTTTCAACCAAAATATGGAACAAAAGGAATCCC 94641 Query 32772 GAAAAGAAAATTCCTTCTA-CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 32830 || || || |||||||||| | || ||||| || | || | || || | || || Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAA--CGAAGCA 94583 Query 32831 G-----TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTC 32885 | ||| ||||| || ||||||| | ||| ||||| | | ||| || ||| Sbjct 94582 GAAGACTCA---ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 94526 Query 32886 TCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAA 32945 || || || | ||| | | ||||| | | |||| | | |||||| || || | Sbjct 94525 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 94466 Query 32946 AGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTA 33005 ||| |||| |||| ||||| || ||||| || || || |||||||| ||||| |||| Sbjct 94465 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 94406 Query 33006 GCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCA-CTATTCC 33064 || || | ||| || || || ||||| || |||||| | ||| || | | || || Sbjct 94405 GCTTCAGGAATTTGAACATCCCGACAAA-TCTTTCTGCAAGATTCTCCCAAAACGATACC 94347 Query 33065 GTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG 33124 || || ||||| || ||||||||||| ||||| | ||| |||| || | Sbjct 94346 ATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAA 94287 Query 33125 TTTATTCCAATCATTGATATC-TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 33183 || |||||||| | | ||| || | || | |||||| | ||||||||||| | Sbjct 94286 CTTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAAG 94227 Query 33184 CCT 33186 ||| Sbjct 94226 CCT 94224 >seq66 Length=178311 Score = 138 bits (152), Expect = 1e-27 Identities = 366/547 (67%), Gaps = 23/547 (4%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTA--ATT--CGTTGGAAA 32712 ||||||||| |||||||| || | |||||| || || | | || ||||||||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAA 8329 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG-GACGCAAATGATCCA 32771 | || | || ||||| || || | |||||| | |||||||||| || ||| || || Sbjct 8328 ATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCC 8269 Query 32772 GAAAAGAAAATTCC-TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 32830 || || || ||||| ||| || || |||||| | | || | || || | || || Sbjct 8268 GAGAAAAATATTCCCTTCAACCGCAGCAAAG-CTACCAGACGTTCAGCAAA--CGAAGCA 8212 Query 32831 G-----TCATGTATCCACTTTT--GAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTG 32883 | ||| ||||| || | ||||||| | ||| ||||| | | ||| || ||| Sbjct 8211 GAAGACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTC 8155 Query 32884 TCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCA 32943 || || || | ||| | | ||||| | | |||| | | |||||| || || | Sbjct 8154 GTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 8095 Query 32944 AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATC 33003 ||| |||| |||| ||||| || ||||| || || || |||||||| ||||| |||| Sbjct 8094 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 8035 Query 33004 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 33063 || || | ||| || || || |||||||| |||||| | ||| || || || | Sbjct 8034 GTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATAC 7975 Query 33064 CGT-CACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG 33120 | | | ||| | ||||| || ||||||||||| ||||| | ||| |||| | Sbjct 7974 CATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAG 7915 Query 33121 TTAG-TTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAAT 33179 | | ||| ||||| || | | ||| || | || | |||||| | ||||||||| Sbjct 7914 TCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAAT 7855 Query 33180 GATGCCT 33186 || |||| Sbjct 7854 GAAGCCT 7848 >seq89 Length=114172 Score = 136 bits (150), Expect = 5e-27 Identities = 368/555 (66%), Gaps = 16/555 (3%) Strand=Plus/Plus Query 32697 ATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 32756 || || || |||||||| || ||||| ||||| | || || || || | |||||||||| Sbjct 97002 ATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATG 97061 Query 32757 GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCT 32816 || |||| || ||||||||||| || ||||| || || ||||| |||| || | ||| Sbjct 97062 GA-ACAAAAGAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCG 97120 Query 32817 CCATAAC-CGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA 32875 || ||| | | | | ||||| || | |||||| |||||| |||| || || Sbjct 97121 GCAAAACTATGAGAACACTCGAATCCATTTCAACGACCAATCCGCCTTC-TTTTCACGCA 97179 Query 32876 AGGCATTGTCTCTATAGCATTAAAGA---GATAGtttttttCATTACTATCTTTAACATA 32932 || | | || || ||| || | || |||| ||| || ||| || ||| Sbjct 97180 GGGAAGGTTTTCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACAC-CTCTCGAATATA 97238 Query 32933 TGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCC 32992 || || |||| | |||||||||||| || | ||||| || |||| |||||| || Sbjct 97239 CGTGTCTATCAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCC 97298 Query 32993 GTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTC 33052 || || || | || |||| | |||||||| || | || || |||| || ||||| Sbjct 97299 ATAAAAACAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTC 97358 Query 33053 ATTCACTATTCCGTCACTG--GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTT 33110 |||||| || || | | | || ||||| || ||||| || || ||| || | | | Sbjct 97359 ATTCACGATGCCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGT 97418 Query 33111 TC----GTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTC 33166 || | ||| | | | | |||||| | |||| ||| | || |||||||| Sbjct 97419 TCTGAAGCCTGAAGCGAAT---TCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTC 97475 Query 33167 CACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAAT 33226 |||||||| || || ||||| ||| |||| | |||||| | |||| || Sbjct 97476 GACTGTCCAGAAACTAGCTTCTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTAT 97535 Query 33227 TGGAAAAATAACAAA 33241 ||||| | |||||| Sbjct 97536 AGGAAATAGAACAAA 97550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631073313200