Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq77 95.1 1e-14 seq36 93.3 4e-14 seq103 86.0 5e-12 >seq77 Length=161124 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCA-TCACAGTCGAAGTGGAGTCGT 25056 |||||||||||| || |||||| | || || || ||| | || | ||||||||| | | Sbjct 114520 AATGCAAATATTCGTGAAGACTCTTACTGGGAAGACCATTTACTCTTGAAGTGGAGCCCT 114461 Query 25057 CTGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 | |||||||| || || | ||| || || ||||| ||||| ||||| || ||| Sbjct 114460 CAGACACTATTGAAAAACTTTAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGAC 114401 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | || |||||| || ||||| || || ||| ||| ||| | | || ||| Sbjct 114400 CAACAAC-GTTTGATTTTGCTGGGAAACAGTTGGAGCATGGTCGTACTCT-CGAGACTAC 114343 Query 25176 AATA--TTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || | ||||||| || || || || || || || || | || || || |||| Sbjct 114342 AACAGCTTCAAAAGGAGTCTACTCTTCACTTGGTCTTACGTCTGAGGGGTGGAA 114289 >seq36 Length=139094 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/220 (71%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATC---CATCA-CAGTCGAAGTGG 25050 || |||||| |||||||||||||| | ||||| || | | ||| | | ||||||| Sbjct 92432 AAGAATGCAGATATTTGTAAAGACACTTACCGGCAAGACGTGCTTCAACTCTTGAAGTGG 92373 Query 25051 AGTCGTCTGACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCA 25109 || | || || ||||| ||| | | ||| || || ||||| ||||| ||||| Sbjct 92372 AGCCTTCAGATACTATTGAGAAATGTCAAGTCCAAGATACAAGACAAGGAAGGAATTCCT 92313 Query 25110 CCTGACCAACAGCGGATT-ATTTTTGCCGGCAAACAA-TTAGAAGATGATCGCACTGTGG 25167 || ||||| || || || || ||||| || || ||| |||||||||| ||| ||| | Sbjct 92312 CCAGACCAGCAACGTTTTGATATTTGCTGGAAAGCAACTTAGAAGATGGTCGTACTCTTT 92253 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||||||||| || || || || || || || Sbjct 92252 CAGACTATAATATTCAAAAGGAGTCTACCCTTCACTTGGT 92213 >seq103 Length=203287 Score = 86.0 bits (94), Expect = 5e-12 Identities = 169/248 (68%), Gaps = 14/248 (6%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCA-------TCACAGTCGAAGTGGA 25051 |||||||||||||| || || ||||| || || ||| | || | || || || Sbjct 14396 ATGCAAATATTTGTGAAAACGTTGACAGGAAAGACCAGTAAGCCTAACGTTAGAGGTCGA 14337 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACT-GACAAAGAAGGGATTCCAC 25110 | || || ||||| || |||| ||| || | || |||||||| || || | Sbjct 14336 ACCTTCGGATACTATAGAAAATGTGAAATCAAAGATTTCAAGATAAAGAAGGTATACCCC 14277 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAA--CAATTAGAAGATGATCGCACTGTGGG 25168 |||| ||||| || |||| ||||| || ||| ||| | ||||| | | ||| || Sbjct 14276 CTGATCAACAAAGGCTTATATTTGCTGGGAAATGCAACTCGAAGACGGAAGAACTCTGTC 14217 Query 25169 CGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAA 25228 || || ||||||||||| ||||||||| | || || || | ||| |||| ||||| Sbjct 14216 GGACTATAATATTCAAAAGGAATCCACGTTGCACTTGGTATTGAGGTTAAGGGGAGG--- 14160 Query 25229 TTATTATA 25236 ||||||| Sbjct 14159 -TATTATA 14153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327382101355