Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq17 479 3e-130 >seq17 Length=139726 Score = 479 bits (530), Expect = 3e-130 Identities = 731/1018 (72%), Gaps = 25/1018 (2%) Strand=Plus/Plus Query 167312 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTG-TGGGCTGGTCTGGATT-ACTTCTTT 167369 ||||| ||||| ||||| || |||||||| ||| | || ||||| || || | || || Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 167370 TTCCCACTGCTTAT---CTGGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGTTACGA 167426 |||| | | || || || | || | ||| |||| || || || |||||||| Sbjct 27303 TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAAC-TTTGTTACTT 27361 Query 167427 GCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAATTTTCTCACGGCAG 167486 |||||||| || || || || ||| ||| | || || ||||||| | || || | Sbjct 27362 CTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGCTG 27420 Query 167487 CAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCTGA 167544 |||| |||| ||||| | |||||| || ||| | | ||| ||| |||| || || Sbjct 27421 CAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCAGA 27477 Query 167545 GTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCT 167604 |||| || ||||| | || ||||| || |||| || | ||| | ||| || | Sbjct 27478 AGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTTT 27537 Query 167605 CCACGGAGCCTTTGCTCTCA-TAGGATTTATGCTTCGGCAATTTGAGATAAGTAGACTAG 167663 || || || |||| | | |||| ||| | | || |||||||| ||| ||| ||| Sbjct 27538 ACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTCAATTTGAAATAGCAAGATTAG 27596 Query 167664 TAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTGTCTTTGTGTCTG 167723 |||| || | || || ||||| || |||||||| || || ||||| || ||||| || | Sbjct 27597 TAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGT-TTTGTTTCAG 27655 Query 167724 TTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGTCGTTTGGTGTTG 167783 | ||||| || ||||| || ||||| | |||||||| |||| || ||||| |||| Sbjct 27656 TATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCCTAGTTTTGGAGTTG 27713 Query 167784 CAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGACGCTCAACCCTT 167843 |||| || |||||||| | |||| | || || |||||||||||||| | || || | Sbjct 27714 CAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATCCAT 27772 Query 167844 TCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTG 167903 ||||||||||||| |||||||| || || || || ||||| | | || || ||||| | Sbjct 27773 TCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATGGAG 27832 Query 167904 TTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTG 167963 || ||||| ||||| | | ||||||||| || || || ||||||| ||| ||| Sbjct 27833 CAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTTTTA 27892 Query 167964 ATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAA 168023 | || || ||| ||||||||||| ||||| || ||||| || || ||||| |||| Sbjct 27893 CACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCGTTT-TGGTCACAAA 27951 Query 168024 TTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTT--ATGCTTTTCGTTCC 168081 |||| ||| ||||||| ||||| | ||| | || |||||| ||||| || || || Sbjct 27952 TTTT-GGTGTTGCTTTTCT-AATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTGCC 28009 Query 168082 TGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTAATCTTCGTGC 168141 || | ||| | |||||||||||||||||||| || || || ||| | ||| | ||||| Sbjct 28010 AGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGTGC 28069 Query 168142 TTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTGAAACTTTCTA 168201 ||||| || || ||||| ||| | | || |||||||||||||| |||||||| || || Sbjct 28070 ATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTTTA 28129 Query 168202 TACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA-CCAAC 168260 ||| ||||| | ||||| |||||||| | | || |||||||| || ||| |||| Sbjct 28130 TACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCAAC 28189 Query 168261 CACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGATA 168318 |||||||||| |||||||||||||| || || || ||| | || || || || | ||| Sbjct 28190 CACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAATA 28246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567231170423200