Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq89 215 6e-51 >seq89 Length=114172 Score = 215 bits (238), Expect = 6e-51 Identities = 421/607 (69%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| | ||| ||||| || ||| || ||||| ||||||||||||||||||||| Sbjct 96957 TACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAA 97016 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 || || | || || | || || |||||||| | ||||||||| ||| ||||| |||| Sbjct 97017 AAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCA 97075 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 ||||| ||||| ||||| || |||||||| || || | ||| ||||||||| | ||| Sbjct 97076 GAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAA 97135 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 ||| | |||||||| || | |||||| || || || || | || || || |||| Sbjct 97136 -CACT-CGAATCCATTTCAACGACCAATCCGCCTTCTT-TTCACGCAGGGAAGGTTTTCA 97192 Query 93323 ATAGCGTTAAATAGGTAATCTCGCTCGTC--CGA---ATCTCGTATGTATGTATCGATTA 93377 || || || || | |||| || ||| ||||| || || || || || | Sbjct 97193 ATGGCAAAGAACAGTCGA---CGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCA 97249 Query 93378 ACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATC 93437 || | ||||||||| || || ||||| ||||| || | ||| || || || ||||| | Sbjct 97250 GCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAAC 97309 Query 93438 TAGCTTCCGTGATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATA 93496 ||||| | || || ||||| || ||| | || | | |||||||| || || Sbjct 97310 GCGCTTCGGGGACTTGTACTTCGGTGCTGAAA-CGAGCTGCCAAGTTTTCATTCACGATG 97368 Query 93497 CCAT--CGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTT 93554 |||| | || || ||||| |||||||| | || ||| || || | || | | | Sbjct 97369 CCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCT 97428 Query 93555 TAAGCTTA-TCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCA-AAA 93612 |||| | |||||||| | |||| || | |||||||||||||| ||||| ||| Sbjct 97429 GAAGCGAATTCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAA 97488 Query 93613 CGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGAC 93672 | | |||||||| |||||||| ||||| || | | |||| || ||||||| || Sbjct 97489 CTA-GCTTCTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAATAGAAC 97547 Query 93673 AAAACGA 93679 ||||||| Sbjct 97548 AAAACGA 97554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556859985591080