Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq77 95.1 1e-14 seq36 95.1 1e-14 seq58 82.4 6e-11 >seq77 Length=161124 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || || || | |||||||||||||| || | Sbjct 114751 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAGTGGAGCCCTCA 114692 Query 22279 GATACCGTGGACGA--TATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||||| | || | | |||| || || ||||||||||| |||||||| || || | Sbjct 114691 GATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 114632 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGA--GGATCACCGCACCGTCTC-CGATT 22393 | |||||| | || ||||| || |||||||| || | || ||||| |||| || | Sbjct 114631 AGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGGTATGGTCGCAC--TCTCGAGACT 114574 Query 22394 ACAACA-TTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||||| ||||||| || || || | || || || || || Sbjct 114573 ACAACATTTCAAAAGGAGTCTACTCTCCACTTGGTCTTACG 114533 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/229 (71%), Gaps = 11/229 (5%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACG-GTCA-CTCTTGAAGTGGAAACCA 22276 ||||| || || || || ||| | || || || || |||| ||||||||||||| || Sbjct 113825 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCCT 113766 Query 22277 CCGA-TACCGTGGACGA--TATCAAAC--AAAAAATTCAAGACAAGGAGGGTATTCCACC 22331 | || || || ||| | |||| || | || ||||||||||| |||||||| || Sbjct 113765 CAGAATATAGTTC-CGAACTGTCAAGTCGAAGATATACAAGACAAGGAAGGTATTCCCCC 113707 Query 22332 CGATCAACAACGTCTTATATT---TGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC 22388 || || |||||| | || || || | |||||||| || ||| ||||| |||| Sbjct 113706 AGACCAGCAACGTTTGATTTTGCATGGGAGTAAACAGTTGGAAGATGGTCGCACTCTCTC 113647 Query 22389 CGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 || |||||||||||||| || || || | || || || ||||| ||| Sbjct 113646 AGACTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTGTTGCGTTTG 113598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/195 (71%), Gaps = 9/195 (5%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACG-GTCA-CTCTTGAAGTGGAAACCA 22276 ||||| || || || || ||| | || || || || |||| ||||||||||||| || Sbjct 114059 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCCT 114000 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || | || | | |||| || || ||||||||||| |||||||| || || | Sbjct 113999 CAGACACTATTGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 113940 Query 22337 AACAACGTCTTATATTTGC----CGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGAT 22392 | |||||| | || ||||| || |||||||| || ||| || || |||| || Sbjct 113939 AGCAACGTTTGAT-TTTGCAGCTTGGGAAACAGTTGGAAGATGGTCGTACTCTCTCAGAC 113881 Query 22393 TACAACA--TTCAAA 22405 ||||||| |||||| Sbjct 113880 TACAACAGCTTCAAA 113866 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTC-ACTCTTGAAGTGGAAACCAC 22277 |||||||| || || || ||| | || || || || | |||||||||||||| || | Sbjct 114519 ATGCAAATATTCGTGAAGACTCTTACTGGGAAGACCATTTACTCTTGAAGTGGAGCCCTC 114460 Query 22278 CGATACCGTGGACGATATCAAACAAAAA-ATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || || | || | | || || || ||||||||||| |||||||| || || | Sbjct 114459 AGACACTATTGAAAAACTTTAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 114400 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTC-CGATTAC 22395 |||||||| | || ||||| || |||||||| ||| || || || |||| || ||| Sbjct 114399 AACAACGTTTGAT-TTTGCTGGGAAACAGTTGGAGCATGGTCGTAC--TCTCGAGACTAC 114343 Query 22396 AACA--TTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 |||| ||||||| || || || | || || || || || Sbjct 114342 AACAGCTTCAAAAGGAGTCTACTCTTCACTTGGTCTTACG 114303 >seq36 Length=139094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 22215 AAAGA-TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTC----ACTCTTGAAGTG 22269 ||||| |||| || ||||| || || | ||||| || ||| | |||||||||||| Sbjct 92433 AAAGAATGCAGATATTTGTAAAGACACTTACCGGCAAGACGTGCTTCAACTCTTGAAGTG 92374 Query 22270 GAAACCACCGATACCGTGGACGA-TATCAAACAAAAAATTCAAGACAAGGAGGGTATTCC 22328 || | | ||||| | || | | |||| || || ||||||||||| || ||||| Sbjct 92373 GAGCCTTCAGATACTATTGAGAAATGTCAAGTCCAAGATACAAGACAAGGAAGGAATTCC 92314 Query 22329 ACCCGATCAACAACGTCTT-ATATTTGCCGGCAAAC-AGTTAGAGGATCACCGCACCGTC 22386 || || || |||||| || |||||||| || || | | ||||| ||| || || | Sbjct 92313 TCCAGACCAGCAACGTTTTGATATTTGCTGGAAAGCAACTTAGAAGATGGTCGTACTCTT 92254 Query 22387 TCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTG 22437 || || || || |||||||| || || ||| | || || || ||||| ||| Sbjct 92253 TCAGACTATAATATTCAAAAGGAGTCTACCCTTCACTTGGTATTGCGTTTG 92203 >seq58 Length=124683 Score = 82.4 bits (90), Expect = 6e-11 Identities = 96/130 (74%), Gaps = 5/130 (4%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 ||||| |||||||||||||| ||||| ||||||||||| ||| | |||||||| ||||| Sbjct 62721 AAAATACAAGACAAGGAGGGAATTCCTCCCGATCAACAGCGTTTGATATTTGCAGGCAAG 62662 Query 22363 CAGTTAGAGGATCAC-----CGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCA 22417 || || || || | | | || | || || || || || ||||| ||||| ||| Sbjct 62661 CAATTGGAAGAGCTCGTAGAAGAACTCTATCGGACTATAATATACAAAAGGAATCTACCT 62602 Query 22418 TACATTTAGT 22427 | || || || Sbjct 62601 TGCACTTGGT 62592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727401494105