Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq77 140 6e-28 seq36 134 3e-26 seq103 105 1e-17 seq58 102 2e-16 >seq77 Length=161124 Score = 140 bits (154), Expect = 6e-28 Identities = 177/238 (74%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGA-TGTTATAATCG 68291 |||| || | || || || |||||||| || || ||||| ||||| | |||| || || Sbjct 114519 TTCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT 114578 Query 68292 -GAGAGTGTCCTCCCAT--CTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 ||||||| | |||| |||| ||||| || || || || || | | ||| ||||| Sbjct 114579 CGAGAGTG--CGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCT 114636 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGC--CTCGATGGTGTCTGCTG 68406 || ||||| |||||||||||||| ||||| | |||||| || ||| || || |||| | Sbjct 114637 GGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGG 114696 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || ||||| | || ||||| || || || || ||||| ||||||||||||||||| Sbjct 114697 GCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATTAT 114754 Score = 138 bits (152), Expect = 2e-27 Identities = 176/236 (75%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTG-GATGTTATAATCG 68291 |||| || | || || || |||||||| || || ||||| ||| | |||| || || Sbjct 113825 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTGAAGCTGTTGTAGTCT 113884 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCG-GCG--AATATGAGTCTTTGTTGGTCG 68348 ||||| || | |||||||| ||||| ||||| || || || | | ||| ||||| Sbjct 113885 GAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAAATCAAACGTTGCTGGTCT 113944 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| |||||||||||||| ||||| | |||||| || || || ||||||| | Sbjct 113945 GGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGGGC 114004 Query 68409 TCTACTTCCA-AGGTGA-TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| | || ||| |||| || || || || ||||| ||||||||||||||| Sbjct 114005 TCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114060 Score = 116 bits (128), Expect = 7e-21 Identities = 165/226 (73%), Gaps = 11/226 (5%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| |||||||| || || ||||| ||||| ||||| || || ||||| || | ||| Sbjct 113602 CGCAACACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCA 113661 Query 68307 TCTTCTAACTGCTT---CCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| ||||| || ||| || || | | ||| ||||| || ||||| |||||| Sbjct 113662 TCTTCCAACTGTTTACTCCCATGCAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCC 113721 Query 68364 TTGTCTTG--AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGA---TTCTACTTCCA 68418 |||||||| ||||| | |||||| | ||| | | | |||| || ||||| | Sbjct 113722 TTGTCTTGTATATCTTCGACTTGACAG-TTCGGAACTATATTCTGAGGGCTCCACTTCAA 113780 Query 68419 -AGGTGA-TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||| |||| || || || || ||||| ||||||||||||||| Sbjct 113781 GAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 113826 Score = 113 bits (124), Expect = 8e-20 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGA--TGTTATAATC 68290 |||| || | || || || |||||||| || || ||||| ||||| | |||| || || Sbjct 114289 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAGTC 114348 Query 68291 GGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGG 68350 ||| || | |||| || ||||| ||||| || || || | | ||||||||| || Sbjct 114349 TC-GAGAGTACGACCATGCTCCAACTGTTTCCCAGCAAA-ATCAAACGTTGTTGGTCTGG 114406 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG-GCCTCGATGGTGTCTGCTGATT 68409 ||||| |||||||||||||| ||||| | ||| | | || || ||||||| | | Sbjct 114407 GGGAATACCTTCCTTGTCTTGTATCTTCGACTTAAAGTTTTTCAATAGTGTCTGAGGGCT 114466 Query 68410 CTACTTCCA-AGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | ||||| | || ||||| || || || || ||||| |||||||| |||||| Sbjct 114467 CCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTCACGAATATTTGCATT 114520 Score = 102 bits (112), Expect = 2e-16 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTG-GATGTTATAATCG 68291 |||| || | || || || |||||||| || || ||||| ||| | |||| || || Sbjct 114059 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTGAAGCTGTTGTAGTCT 114118 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCC-CGGCGAATATGAGTCTTTGTTGGTCGGG 68350 ||| || | |||||||| ||||| || | | || || || | | ||| ||||| || Sbjct 114119 C-GAGAGTACGACCATCTTCCAACTGTTTACGCTGCAAA-ATCAAACGTTGCTGGTCTGG 114176 Query 68351 TGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC--GGCCTCGATGGTGTCTGCTGAT 68408 ||||| |||||||||||||| || | | |||||| | |||| | | |||||| | Sbjct 114177 GGGAATACCTTCCTTGTCTTGTAT-TGGGACTTGACAAGTCCTCCAAGCTGTCTGAGGGC 114235 Query 68409 TCTACTTCCA-AGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || ||||| | || ||||| || || || || ||||| ||||||||||||||| Sbjct 114236 TCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114290 >seq36 Length=139094 Score = 134 bits (148), Expect = 3e-26 Identities = 167/223 (75%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||||||||||||| || || ||||| ||||| || ||||| || || || || | ||| Sbjct 92207 CGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACCA 92266 Query 68307 TCTTCTAA-CTGCTTCCCGGCGAATAT-GAGTCTTTGTTGGTCGGGTGGAATGCCTTCCT 68364 |||||||| ||||| || || ||||| | | ||| ||||| || ||||| ||||||| Sbjct 92267 TCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCT 92326 Query 68365 TGTCTTGAATCTTTGCCTTGAC-GGCCTCGATGGTGTCTGCTGATTCTACTTCCA-AGGT 68422 ||||||| ||||| | |||||| ||| || || |||| | || ||||| | || | Sbjct 92327 TGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTT 92386 Query 68423 GATG---GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || || || || ||||| || |||||||||||| Sbjct 92387 GAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/231 (71%), Gaps = 12/231 (5%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTC--C 68301 || |||||||||||||| || || ||||| ||||| || ||||| || | | | | | Sbjct 91789 AGACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGGAAATCACGAC 91848 Query 68302 T----CCCATCTTCTAAC---TGCTTCCCGGCGAATATGAGT-CTTTGTTGGTCGGGTGG 68353 | | || | | | | ||||| || || ||||| | | ||| ||||| || || Sbjct 91849 TAAAGCTGATTTCCGACCAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGG 91908 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 || |||||||| ||||| ||||| | ||||||| ||| || ||||||| | || | Sbjct 91909 GATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCAATAGTGTCTGAAGGCTCCA 91968 Query 68413 CTTCCAAGGTGA-TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||| | |||| |||| || || || || ||||| || |||||||||||| Sbjct 91969 CTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAATATCTGCATT 92019 >seq103 Length=203287 Score = 105 bits (116), Expect = 1e-17 Identities = 158/223 (71%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 |||||||||||| | |||||| || ||||| || ||||| || || || || || || || Sbjct 14174 CAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCGACAGAGTTCTTCCGTC 14233 Query 68309 TTCTAACTGC--TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||| | ||| ||||| || ||||| || |||||||| || || || || ||||| || Sbjct 14234 TTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGGGGGTATACCTTCTTTA 14293 Query 68367 TCTTG-AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGA- 68424 ||||| |||||||| || || || || || || | | ||| || || || || | Sbjct 14294 TCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTTCGACCTCTAACGTTAG 14353 Query 68425 ------TGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||| || | || || || ||||| ||||| Sbjct 14354 GCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCAT 14396 >seq58 Length=124683 Score = 102 bits (112), Expect = 2e-16 Identities = 142/199 (71%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA----- 68306 ||||||||| | || || || ||||| || ||||| || || || || || | | Sbjct 62591 TACCAAGTGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGC 62650 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| || ||||| || || ||||| | | ||||| ||||| ||||| || |||||| Sbjct 62651 TCTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTG 62710 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 ||||| || || | ||| ||| || || ||||| | | || |||||||| || ||| Sbjct 62711 TCTTGTATTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATG 62770 Query 68427 GTTTTTCCCGTGAGGGTCT 68445 || || || || || |||| Sbjct 62771 GTCTTGCCAGTAAGTGTCT 62789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621052127240