Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq79 107 5e-18 seq77 96.9 8e-15 seq103 87.8 4e-12 seq58 84.2 5e-11 seq36 84.2 5e-11 >seq79 Length=138238 Score = 107 bits (118), Expect = 5e-18 Identities = 194/282 (69%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 351484 GTACTCGAAGGGGGGTCGATTCACGTCGATGGCGAAGGGACGCTTATAACGACAAAAGAA 351543 || || ||||| ||||||||| || ||||| ||||| || ||| | |||||| ||||| Sbjct 24009 GTCCTGGAAGGAGGGTCGATTTCAGTAGATGGGGAAGGAACTCTTGTTACGACAGAAGAA 24068 Query 351544 TGTCTATTGTCCGCCGGCAGGAACCCCACC-ATGAGCCAACAAGATATTGAATATTATCT 351602 ||| ||||| | || ||||| | ||| | || | ||||||||| || | Sbjct 24069 TGTTTATTGAATCCAAATAGAAACCCATCGGATGTCCAAAGAGGATATTGAAAATCGGTT 24128 Query 351603 CAAAGAATACCTTAATGTCGAGAAAATCATCTGGTTAGAATATGGTGT---TGCAGATGA 351659 ||||||| |||| | ||||| || | ||||| ||||| || || ||||| Sbjct 24129 AAAAGAATTCCTTGGAATTAAGAAAGTCGTTTGGTTGCCTTATGGAGTCTATGGTGATGA 24188 Query 351660 CGAAACAAATGGGCATGTTGATAACATGGCTTGTTTTTCACGACCCGGCGAAGTTATCTT 351719 || || ||||| ||||||||||||||| | ||| | | ||| || ||| | || Sbjct 24189 TGACACCAATGGACATGTTGATAACATGTGTCAATTTACTCAACCTGGAACTGTTGTATT 24248 Query 351720 GGCATGGACCGATGATCCTAAACATCCCCAATATGAACGTTC 351761 | ||||| |||||||| | | || || ||||||||||| Sbjct 24249 GCATTGGACAGATGATCCAAGGGACCCTCAGTATGAACGTTC 24290 >seq77 Length=161124 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/205 (72%), Gaps = 12/205 (6%) Strand=Plus/Plus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGT--CTTCTAATTGTTTTCCTGCGAA 288341 ||||| || || ||||| |||| ||||| || | |||| || ||||| ||||| || Sbjct 114559 CTTTTGAAATGTTGTAGTCT-CGAGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAA 114617 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 |||| ||| || || |||||| || ||||| || || || || |||| || || Sbjct 114618 AATCAAACGTTGCTGG---TCTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGAC 114674 Query 288399 GTTTTCT--ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 |||| |||| ||| | || ||||| || || || |||||||| || |||||| Sbjct 114675 AGCTTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTC 114734 Query 288457 TTGACGAATATCTGCATTA-TGTTA 288480 || |||||||||||||||| ||||| Sbjct 114735 TTTACGAATATCTGCATTATTGTTA 114759 >seq103 Length=203287 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 10/208 (5%) Strand=Plus/Plus Query 288276 CGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTG--TTTT 288333 |||| ||| ||||| ||||||||||| | || || | ||||||||| | ||| ||| Sbjct 14189 CGTGGATTCCTTTTGAATATTATAGTCCGACAGAGTTCTTCCGTCTTCGAGTTGCATTTC 14248 Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTG-GATTTTCGC 288392 || || || || || | |||||| | || || ||||||||||| || || || | Sbjct 14249 CCAGCAAATATAAGCCTTTGTTGATCAGGGGGTATACCTTCTTTATCTTGAAATCTTTGA 14308 Query 288393 TTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGA-------TCGTCTTCC 288445 |||||| |||||||||| ||| | ||| || || | ||| | | ||||| | Sbjct 14309 TTTCACATTTTCTATAGTATCCGAAGGTTCGACCTCTAACGTTAGGCTTACTGGTCTTTC 14368 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||| || || || ||||| ||||| Sbjct 14369 CTGTCAACGTTTTCACAAATATTTGCAT 14396 >seq58 Length=124683 Score = 84.2 bits (92), Expect = 5e-11 Identities = 128/181 (71%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTC--CG---TCTTCTAATTGTTTTCCT 288336 ||| ||||| ||||||||||| | || || | || || ||||| ||||| || ||| Sbjct 62609 TTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGCTCTTCCAATTGCTTGCCT 62668 Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 || || |||| |||||||||| || ||||| || || || || ||||| | || Sbjct 62669 GCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTGTCTTGTATTTTGGACTTT 62728 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 |||||||| |||| ||| | || ||||| | || || ||||| || || || ||| Sbjct 62729 ACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATGGTCTTGCCAGTAAGTGTC 62788 Query 288457 T 288457 | Sbjct 62789 T 62789 >seq36 Length=139094 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/202 (71%), Gaps = 13/202 (6%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAA-TTGTTTTCCTGCGAA 288341 || ||||| ||||||||||| | || || || || |||||||| ||| ||||| || || Sbjct 92231 TCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAA 92290 Query 288342 GATCAGA-CGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCA 288397 |||| | || || || ||||| |||||||| || || || || || | || | Sbjct 92291 TATCAAAACGTTGCTGG---TCTGGAGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGA 92347 Query 288398 CGTTT-TCTATAGAATCGCTCGATTCTACTTCGAGCGT----GATCGTCTTCCCGGTCAG 288452 | ||| || |||| ||| | || ||||| || || | |||||| ||||| || Sbjct 92348 CATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAG 92407 Query 288453 AGTCTTGACGAATATCTGCATT 288474 ||||| || |||||||||||| Sbjct 92408 TGTCTTTACAAATATCTGCATT 92429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179652631624326