Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq72 107 2e-18 seq66 86.0 7e-12 seq17 86.0 7e-12 seq82 84.2 3e-11 seq89 82.4 9e-11 >seq72 Length=85273 Score = 107 bits (118), Expect = 2e-18 Identities = 282/419 (67%), Gaps = 21/419 (5%) Strand=Plus/Plus Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 |||||| || | || || || || || || || || |||||||||||||| | ||| Sbjct 75647 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTT 75706 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAA 126183 |||||||| || || | |||||| ||||||||||| || ||||| || || || || Sbjct 75707 TTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCTTCTACCGCAGCAAA 75766 Query 126184 CGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTG 126243 || | ||||| |||||||| || || | |||| ||| |||| ||||| | Sbjct 75767 AGCTACCAGACGTTCAGCAAACGAAGCAGA---AGACTCAATCCATTTCAGAGCCCATTT 75823 Query 126244 CGCCTTTTTCTCGATACACGGGA--CGGTCTGGATCGCTTCAAAG----AGTTCCTTCTT 126297 || || ||||| |||||||| | || || || ||||||||| | ||| || Sbjct 75824 GGCTTTCTTCTCAATACACGGAATTCGTTC--CATTGCTTCAAAGTAAACGAGCCT--TT 75879 Query 126298 TTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCAT 126357 | |||| | |||| | || || | || || ||| ||||| ||||| |||| | Sbjct 75880 TCCTGA-GCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATATT 75938 Query 126358 TTCATTATGGCA-CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGG 126416 ||| | || | |||| | | |||||| | || ||||| || || || || || Sbjct 75939 TTCCAT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC-CCGA 75996 Query 126417 CAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 126473 |||| | || || | |||||| ||||| || ||||| || |||||| || |||| Sbjct 75997 CAAA--TCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGAATGCCA 76053 >seq66 Length=178311 Score = 86.0 bits (94), Expect = 7e-12 Identities = 257/383 (67%), Gaps = 23/383 (6%) Strand=Plus/Minus Query 126104 CCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC-GCACAAAATGAACCCGAGAAGAA 126162 |||||||||||||| | ||| |||||||| || || | |||||| ||||||||||| || Sbjct 8320 CCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCGAGAAAAA 8261 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTC 126222 ||||||| || | | || || | ||||| |||||||| || || | || Sbjct 8260 TATTCCCTTCAACCGCAGCAAAGCTACCAGACGTTCAGCAAACGAAGCAGA---AGACTC 8204 Query 126223 AAACCACT--TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGA--CGGTCTGGATCG 126278 || ||| | ||| ||||| | || || ||||| |||||||| | || || || | Sbjct 8203 AATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC--CATTG 8146 Query 126279 CTTCAAAGA---GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTG 126335 ||||||| | | ||| ||| |||| | |||| | || || | || || ||| | Sbjct 8145 CTTCAAATAAACGAGCCT--TTTCCTGA-GCATCTCTTATATATGTGTCGATAAGTAGAG 8089 Query 126336 AATATGTTTCGCCGTGGACCATTTCATTATGGCA-CTGATACGCGTAGAAAGAGCGCGCT 126394 |||| ||||| |||| |||| | || | |||| | | |||||| | || ||| Sbjct 8088 AATACGTTTCTGAATGGATATTTTCCAT-TGCTATCTGAAATCCATAGAAACATCGTGCT 8030 Query 126395 TCGCTTATCTGTACCTCATCGGCAAAATTGTTAT-TGATATTCTCAAAAACAATTCCA-- 126451 || || || || || || |||||| || | | |||||| ||||| || ||| Sbjct 8029 TCAGGAATTTGAACATC-CCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCATA 7971 Query 126452 -TCGGACCCAGCAAAAAACGCCA 126473 || || |||||| || |||| Sbjct 7970 CTCTGAGGAAGCAAAGAATGCCA 7948 >seq17 Length=139726 Score = 86.0 bits (94), Expect = 7e-12 Identities = 169/245 (69%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 10828 ATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCAT 10887 |||||| | || || || || || |||| || || || | ||||| |||||||| Sbjct 51960 ATCAATTCTATTAGTTGCTGCTATAACAATTATACCTGTATTTCCTTCAAATCCATCCAT 52019 Query 10888 CTCAGTCAAGAGTTGATTGATG-GTTTGTTCGCGTTCATCATTCGCGGGCAT-ACCACCC 10945 || || || |||||| | | | |||||||| | ||||||||| || || | ||| Sbjct 52020 TTCTGTTAATAGTTGAATTAAGAGTTTGTTCTCTTTCATCATT-GCCTCCACCAATACCT 52078 Query 10946 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTT 11005 | || | ||| |||| || || ||||||||||| || || || ||||| ||| |||| Sbjct 52079 GTACCTCTTTGTCTACCAACAGCATCAATTTCATCTATAAATACAATACAAGGTGCATTT 52138 Query 11006 TCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCC 11065 || || || ||| | |||| ||||| || || || || ||||||||||| Sbjct 52139 TCTTTAGCTTTTTGAAA-AGGTCTCTTACTCTAGACGCTCCTACTCCTACAAACATTTCT 52197 Query 11066 ACAAA 11070 ||||| Sbjct 52198 ACAAA 52202 >seq82 Length=95658 Score = 84.2 bits (92), Expect = 3e-11 Identities = 281/421 (67%), Gaps = 26/421 (6%) Strand=Plus/Minus Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 |||||| || | || || || || || || || || |||||||||||||| | | Sbjct 94729 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTC---T 94673 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAA-CCCGAGAAGAAGATTCCCTCCACACAC-GCG 126181 |||||||| || || | |||||| ||| |||||||| || ||||| || | | | || Sbjct 94672 TTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAAAAATATTCCTTCTAACCGCAGCA 94613 Query 126182 AACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCAC 126241 || || | ||||| |||||||| || || | |||| ||| |||| ||||| Sbjct 94612 AATGCTACCAGACGTTCAGCAAACGAAGCAGA---AGACTCAATCCATTTCAGAGCCCAT 94556 Query 126242 TGCGCCTTTTTCTCGATACACGGGA--CGGTCTGGATCGCTTCAAAGA---GTTCCTTCT 126296 | || || ||||| |||||||| | || || || |||||||| | | ||| | Sbjct 94555 TTGGCTTTCTTCTCAATACACGGAATTCGTTC--CATTGCTTCAAATAAACGAGCCT--T 94500 Query 126297 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 126356 || |||| | |||| | || || | || || ||| ||||| ||||| |||| Sbjct 94499 TTCCTGA-GCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATAT 94441 Query 126357 TTTCATTATGGCA-CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 126415 |||| | || | |||| | | |||||| | || ||||| || || || || || Sbjct 94440 TTTCCAT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC-CCG 94383 Query 126416 GCAAAATTGTTATTG--ATATTCT-CAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 126472 |||| | || || | ||||| | ||||| || ||||| || |||||| || ||| Sbjct 94382 ACAAA--TCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAGGAAGCAAAGAATGCC 94325 Query 126473 A 126473 | Sbjct 94324 A 94324 >seq89 Length=114172 Score = 82.4 bits (90), Expect = 9e-11 Identities = 103/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || || || || || || | ||||| || ||| |||||| ||||| | ||||| ||| Sbjct 96987 CCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTC 97046 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||||||| || || | |||||| ||||| || ||||| || || || || || || Sbjct 97047 TTCAACCAAAATATGGAACAAAA-GAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAA 97105 Query 126185 GCAAAGAGACGCTCAGCAAA 126204 |||| |||||||| ||||| Sbjct 97106 GCAACCAGACGCTCGGCAAA 97125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597352726370360