Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq74 93.3 4e-14 seq36 89.7 5e-13 seq77 86.0 6e-12 >seq74 Length=163707 Score = 93.3 bits (102), Expect = 4e-14 Identities = 275/417 (66%), Gaps = 8/417 (2%) Strand=Plus/Plus Query 154886 CCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAA 154945 |||| |||| | | || ||| || |||||||||||||| || ||||| ||| | || || Sbjct 151726 CCACTTTTCATCTCTTTCTACTCGCTTCATAAACAAATCGGGAACCCATAAACCATAAAA 151785 Query 154946 CAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCT-TTAAATTCAAAAAATCAT 155004 ||||| || || || ||||| ||||| ||| | | |||| ||||| ||| Sbjct 151786 TAAATCTCGTGCTCGATTCTCTTC-CTTTCCATGATTCTTTCTCAAATCTAAAAACTCAA 151844 Query 155005 ATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCGTTT---TCCTC 155061 | |||||| ||||| ||||| ||||| | || | || ||||| | || ||||| Sbjct 151845 AATGGTCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTCTTTCCTCCTC 151904 Query 155062 CTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACA-ATGGTTCCACGCCGCTG 155120 ||||||| || | | | || || ||| | || || | || | || | | ||| || Sbjct 151905 CTTGATCGACATATCTCGCAGTATCATTAAATACTCGAAGCATAGGGAACAATGCCATTG 151964 Query 155121 GCCGTGCCGTTGGTGCCACGTAT-CGCGCTGCCGCGAGCACGCGCTTTATGAACATTAAC 155179 | || || ||||| || || || || | | ||| || | ||||| | Sbjct 151965 GAAGTTCCATTGGTACCTCGAATATACGAT-TTGGTAGCTCGAATGTCGTGAACTGCCAA 152023 Query 155180 GCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCC 155239 || | ||| || | |||||| || |||||| | |||||| || || || || Sbjct 152024 TCCAATACCGCCAGCACTTTTAGAAATCACAGCACAGCTCTTCAAAGTATCATAAATGCC 152083 Query 155240 TTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGG 155296 || || |||||| ||| || | ||||||||| |||||||| |||||| |||| Sbjct 152084 TTCAATAGAGTCTTCCGTCATAGTGAGCAAGAAACAAGAAGATAACTGAGGTCGAGG 152140 >seq36 Length=139094 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/211 (71%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC-AAGCTG 64299 |||| || || || |||||||| || || |||| | || || | ||||| ||| || Sbjct 92219 TGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATCTTCTAAGTTG 92278 Query 64300 CTTGCCGGCATAAATGAGC-CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTT 64358 ||| || ||| | || | || |||||||| |||||||||||||| || |||||||| | Sbjct 92279 CTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGTATCT 92338 Query 64359 TTTGCTTTACA-ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT-ACG---GTCTT 64413 | ||| ||| ||| | ||||| | |||||||| | |||| | | ||||| Sbjct 92339 TGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCACGTCTT 92398 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||||| | || ||||| || || |||||| Sbjct 92399 GCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 >seq77 Length=161124 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/213 (71%), Gaps = 9/213 (4%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || |||||||||||||| |||| || ||||| | ||||| | ||| Sbjct 113614 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGAGAGAGTGCGACCATCTTCCAACTGT 113673 Query 64301 TTGCCGGCAT---AAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 || | ||| |||| | || |||||||| || ||||| ||||| || |||||||| Sbjct 113674 TTACTCCCATGCAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGTATA 113733 Query 64358 TTTT--GCTTTACA-ACCTCCACTGTA-TCACCGGCGTCCACTTCTACAG-TTAC-GGTC 64411 | || ||| ||| | ||| || || || |||||||| | || | || |||| Sbjct 113734 TCTTCGACTTGACAGTTCGGAACTATATTCTGAGGGCTCCACTTCAAGAGCTGACTGGTC 113793 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| |||||||| || |||||| Sbjct 113794 TTCCCAGTAAGAGTCTTTACGAATATCTGCATT 113826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644069269480