Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq77 100 3e-16 seq36 95.1 1e-14 seq58 86.0 6e-12 >seq77 Length=161124 Score = 100 bits (110), Expect = 3e-16 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 ||||| ||||| ||||| | ||||| ||||||||||| || ||||| ||||| || ||| Sbjct 114598 TCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTGTCT 114657 Query 45249 TGAATTTTTTGTTTGATCGCTTCT--ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || || || |||| |||||| | || || || | ||| ||||| ||||||| | Sbjct 114658 TGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTAATGG 114717 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| ||||| || || ||||| Sbjct 114718 TCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114751 Score = 82.4 bits (90), Expect = 7e-11 Identities = 118/162 (73%), Gaps = 7/162 (4%) Strand=Plus/Plus Query 45185 ATCGTCCAATTGTTTTCC----TGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTT 45240 ||| ||||| ||||| || ||| | ||||| ||||||||||| || ||||| |||| Sbjct 113899 ATCTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAACGTTGCTGGTCTGGGGGAATACCTT 113957 Query 45241 CTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAG 45300 | || ||||| || || |||| ||||| | ||||| || | ||| ||||| |||| Sbjct 113958 CCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGGGCTCCACTTCAAGAG 114017 Query 45301 -TAAC-CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || ||||| ||||| || || ||||| Sbjct 114018 CTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114059 >seq36 Length=139094 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/213 (72%), Gaps = 13/213 (6%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCGTCCAA-T 45194 || || || || |||||||| |||||||| || ||| | | || ||| || || | Sbjct 92219 TGAAGGGTAGACTCCTTTTGAATATTATAGTC--TGAAAGAGTACGACCATCTTCTAAGT 92276 Query 45195 TGTTTTCCTGCGTATATCAAT-CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAAT 45253 || ||||| || ||||||| ||||||||||| || ||||| ||||| || ||||| || Sbjct 92277 TGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTGTCTTGTAT 92336 Query 45254 TTTTTGTTTGATCGCTTCT--ACGGTGTCGGAAGACTCGACTTCGAGAGT--AA--CCGT 45307 || |||| | |||| | || || |||| ||| ||||| ||||| || ||| Sbjct 92337 CTTGGACTTGA-CATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGAAGCACGT 92395 Query 45308 TTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || || |||||||| || ||||| Sbjct 92396 CTTGCCGGTAAGTGTCTTTACAAATATCTGCAT 92428 Score = 87.8 bits (96), Expect = 2e-12 Identities = 118/158 (75%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 45187 CGTCCAATTGTTTTCCTGCGTATATCAAT-CGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||| ||| ||||| || ||||||| ||||||||||| || || || ||||| ||| Sbjct 91862 CGACCAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGGATTCCTTCCTTA 91921 Query 45246 TCTTGAATTTTTTG-TTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT-A 45302 ||||| || || | |||| || | || | ||||| |||| ||| ||||| ||||| | Sbjct 91922 TCTTGTATCTTGGGACTTGA-CGTTCTCAATAGTGTCTGAAGGCTCCACTTCAAGAGTGA 91980 Query 45303 ACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || || || || ||||| || ||||| Sbjct 91981 ATGGTCTTGCCTGTAAGTGTCTTCACAAATATCTGCAT 92018 >seq58 Length=124683 Score = 86.0 bits (94), Expect = 6e-12 Identities = 138/197 (70%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAAT-CGCTGACGGTTTTAGA----ATCGTCCA 45192 |||| || ||||||||||| |||||||| | || | | | || | || |||| Sbjct 62598 TGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGCTCTTCCA 62657 Query 45193 ATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAA 45252 |||| || ||||| ||||||| || || || || || ||||| || || || ||||| | Sbjct 62658 ATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTGTCTTGTA 62717 Query 45253 TTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGC 45312 |||| || | ||| | |||||||||| ||| ||||| | ||||| || |||| Sbjct 62718 TTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATGGTCTTGC 62777 Query 45313 CGGTTAGAGTTTTTACA 45329 | || || || | |||| Sbjct 62778 CAGTAAGTGTCTATACA 62794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002538945320