Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq17 506 3e-138 >seq17 Length=139726 Score = 506 bits (560), Expect = 3e-138 Identities = 745/1030 (72%), Gaps = 25/1030 (2%) Strand=Plus/Minus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | || || || || | ||| || || || || || |||||||| |||||||||||| Sbjct 28246 TATTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAA-TTTTCATGTGGT 28188 Query 6317 TGA-TCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATA 6375 ||| || || ||||||||| || | || ||||||||| | || | || || ||||| Sbjct 28187 TGAATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGGAGTAAATTTTTAGTATA 28128 Query 6376 GAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGC 6435 || || || || ||||||||||| || || | | ||||| ||||| || ||||| || Sbjct 28127 AAAGGTTTCAAATTCTGGATCCTCTGCGGCACGTAATTCTTGAGAAACGAAATCATATGC 28068 Query 6436 TC-TAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAG 6494 | ||| |||| |||||| || ||||||||||| | ||||| | || |||| | Sbjct 28067 ACGTAAATTTAA-TGCAAGTCCTATAATACCAATAGAACTTGTCCATAATCCAGTAACTG 28009 Query 6495 GAACAAACAGCAT--AAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGAT 6552 | ||||| ||||| ||||||||||||||| | ||||| ||| | | |||||| || Sbjct 28008 GCACAAATAGCATTCAAAGAAATGTAGCCATCTTTTATTAGAAAAG-CAACACCAAA-AT 27951 Query 6553 CTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTC 6612 || ||||| ||||||||||| || ||||| ||||| || || ||| |||||| || Sbjct 27950 TTGTGACCA-AAACGATTAGCTGTAACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGT 27892 Query 6613 AAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGC 6672 ||| || |||||||||| | ||| ||||||||||| || ||||| |||||||| || Sbjct 27891 AAAAGCTCTGAAAGTATTAGCAGCTTCGCCATCTTCAAATAAGGTATTTTCTACAGTTGC 27832 Query 6673 ACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAA 6732 || |||||||| || | ||||||||||| | || || || |||||||||||||| || Sbjct 27831 TCCATGAATAGCGCACAATAATGCTCCACCAAGTATTCCAGCAACACCCATCATATGGAA 27772 Query 6733 CGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGC 6792 || || | |||||||| |||||||| || | || | | || | || || ||||| Sbjct 27771 TGGATTTAAAGTCCAGTTATGGAAGCCTTGCA-AAATAAAATAAATCTAAAGATAGCTGC 27713 Query 6793 AACACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGAC 6852 ||| ||||| || |||| |||||||| | ||||| || ||||| || ||||| || Sbjct 27712 AACTCCAAAACTAGGAGCAA--AACCAACTAGCTTGTCCAAGTGGATAAATAAGAAATAC 27655 Query 6853 AGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGAC 6912 || ||||| || ||||| || || ||||| || |||||||| || || | ||| || || Sbjct 27654 TGAAACAAA-ACTGCAATTGGTCCCGAAAAAGCTATTGCATTATATGGTCTAATTCCTAC 27596 Query 6913 TAGACGTGCGATCTCAAACTGCCG-AAGCATGAAACCTA-TAAGGGCAAAGGCTCCGTGG 6970 || | ||| || ||||| || || || || ||||||| ||| |||| || || || Sbjct 27595 TAATCTTGCTATTTCAAATTGACGTAAACA--AAACCTATTAATTCCAAAAGCACCATGT 27538 Query 6971 AGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCT 7030 | || ||| | ||||| || |||| ||| ||| | ||||| || |||||| Sbjct 27537 AAAGCTGTAAATGTCCATAAACCTCCAATTTGACACCATCTAGTAAAATCACCTTGAGCT 27478 Query 7031 TCTGGACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCA 7090 ||||| ||||||| || |||| || ||||| | | | ||||| ||||||| ||| Sbjct 27477 TCTGGTCCCCATA-AAATAGTAATGAGTGTCCCATACTATTTGCAGGGCTTGATACTGCA 27419 Query 7091 GCAGTAAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTC 7150 ||||| | ||||||||||| || | ||| |||||||| | || ||||| ||||| Sbjct 27418 GCAGTTA-AAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGAGTATACCAAGAA 27360 Query 7151 GTGACGAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGG--TAAGCAGTAGGGAACA 7208 || || |||||||| || || | |||| |||| || || ||| | || | | |||| | Sbjct 27359 GTAAC-AAAGTTGTACCTGTAAACCAAGCGCCTAGGGCTAGGGTTTAGGAACAAGGAAAA 27301 Query 7209 G--AAGAAGACCTGACCAACCAA-CAAAAACGAACCTATCACGCTTAAGCCAGTCATCGA 7265 | | | ||||||||| |||| ||| || || | |||||| || ||||| ||||| | Sbjct 27300 GTAATTCAAACCTGACCATCCAATTAAATACAAAGCGATCACGTTTTAGCCAATCATCAA 27241 Query 7266 GTACATCAAA 7275 || ||| || Sbjct 27240 CTAAATCGAA 27231 Score = 96.9 bits (106), Expect = 4e-15 Identities = 72/83 (87%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 176122 TGGGCAGGGAGGGATTTGAACCCCCGTAGG-CAGAGCCAGCGGATTTACAGTCCGCCTCC 176180 ||||| ||| ||||||||||| |||||| || | ||||||||||||||||||||| || Sbjct 46244 TGGGCCGGGTTGGATTTGAACCAACGTAGGGCAAAACCAGCGGATTTACAGTCCGCCCCC 46185 Query 176181 ATTAACCACTCGGACACCTACCC 176203 ||||||||||||| |||| |||| Sbjct 46184 ATTAACCACTCGGGCACCGACCC 46162 Score = 82.4 bits (90), Expect = 9e-11 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 10249 GTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAAC 10308 || ||||| | ||||||||| || | || || || | | || |||||||| | || Sbjct 57098 GTAGGATATGCAACACAGGTTAGTACAAATCCTGCTTTTACTTGATCATCATCTAA-AAG 57040 Query 10309 GATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGC- 10367 || ||||| ||||||||| || | |||||||||||| ||| | ||||| || Sbjct 57039 GACTGATCAGATTGATCTACTTCTCCTTCTAAGAGTTTGCCTGCGCAAGTAGAACATGCT 56980 Query 10368 -ACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGT 10426 || |||| || || ||| ||| || | ||| ||||||||| ||||| | || | Sbjct 56979 TCCCTGCTCTACAAGAATAGGGGAGATCTAATCCTTGTTCTTCAGCTGCATCTAATATAT 56920 Query 10427 ACTGA-TCGTCAGCACACTCAAAAGT 10451 | ||| || |||| |||||||| ||| Sbjct 56919 ATTGATTCATCAGGACACTCAATAGT 56894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622123890142480