Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq72 89.7 6e-13 seq89 87.8 2e-12 >seq72 Length=85273 Score = 89.7 bits (98), Expect = 6e-13 Identities = 279/420 (66%), Gaps = 23/420 (5%) Strand=Plus/Plus Query 127537 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTT 127596 |||||| || | || || || || || || || || |||||||||||||| | ||| Sbjct 75647 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTT 75706 Query 127597 CTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAA 127656 |||||||| || || | |||||| || || ||||| || || || || || || || Sbjct 75707 TTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCTTCTACCGCAGCAAA 75766 Query 127657 CGCAAATAGACGCTCGGCAAA-GGAGCGGGACTTTGTATCAAACCACTTCATCGCCCACT 127715 || | ||||| || ||||| | ||| | | | |||| ||| |||| ||||| | Sbjct 75767 AGCTACCAGACGTTCAGCAAACGAAGCAGAA----GACTCAATCCATTTCAGAGCCCATT 75822 Query 127716 GTGCCTTTTTCTCGATACATGGGA--CGGTCTGGATCGCTTCAAAG----AGTTCCTTCT 127769 || || ||||| ||||| || | || || || ||||||||| | ||| | Sbjct 75823 TGGCTTTCTTCTCAATACACGGAATTCGTTC--CATTGCTTCAAAGTAAACGAGCCT--T 75878 Query 127770 TTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 127829 || |||| | |||| | || || | || || ||| ||||| ||||| |||| Sbjct 75879 TTCCTGA-GCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATAT 75937 Query 127830 TTTCATTATGGCA-CTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCG 127888 |||| | || | |||| | | |||||| | || ||||| || || || || || Sbjct 75938 TTTCCAT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC-CCG 75995 Query 127889 GCAAAATTGTTATTG--ATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCA 127946 |||| | || || | |||||| ||||| || ||||| || |||||| || |||| Sbjct 75996 ACAAA--TCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGAATGCCA 76053 >seq89 Length=114172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || || || || || || | ||||| || ||| ||| || ||||| | ||||| ||| Sbjct 96987 CCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGTCCAGGCATCAACCCCCGTTTC 97046 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 |||||||| || || | |||||| || ||||| ||||| ||||| || || || || Sbjct 97047 TTCAACCAAAATATGGAACAAAA-GAACCAGAAAAGAATATCCCTTCGACCGCTGCAAAA 97105 Query 127658 GCAAATAGACGCTCGGCAAA 127677 |||| |||||||||||||| Sbjct 97106 GCAACCAGACGCTCGGCAAA 97125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506302745720