Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq89 161 1e-34 seq72 105 7e-18 seq82 95.1 1e-14 seq77 89.7 5e-13 >seq89 Length=114172 Score = 161 bits (178), Expect = 1e-34 Identities = 426/633 (67%), Gaps = 33/633 (5%) Strand=Plus/Plus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||||||||| || ||||||||||| || || | || || | || ||| || |||| Sbjct 96965 GCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAG 97024 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || ||||| | || ||||| || | ||||||||||| | ||| || |||||||| Sbjct 97025 TCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAA 97083 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTG----C 133069 | || ||||| || || ||||| ||||| |||||| | || || || | Sbjct 97084 TATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAA-------CTATGAGAAC 97136 Query 133070 TGGCGA-TCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATG 133128 ||| |||| || || ||| || ||||| | ||| ||||| || | |||| ||| Sbjct 97137 ACTCGAATCCATTTCAACGACCAATCCGCCTTCT-TTTCACGCAGGGAAGGTTTTCAATG 97195 Query 133129 GCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACG----TAGGTGTCGATGAGGGT 133184 || |||| || | || ||||| || | | | || || ||||| || || Sbjct 97196 GCAAAGAACAGTCGACGCTTTTCTTC-GAC-ACCTCTCGAATATACGTGTCTATCAGCAA 97253 Query 133185 CGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGC 133244 || |||||||||||||||||| || ||||| || | ||||||||| ||||| || ||||| Sbjct 97254 CGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGC 97313 Query 133245 CTCGACCACCTGCACTTCTTGAGC-GAAACGCTCGACCAGATTTTCGTTGACGATGCCGT 133303 ||| || || ||||| | || |||||| | ||| ||||| || |||||||| | Sbjct 97314 TTCGGGGACTTGTACTTC-GGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCAT 97372 Query 133304 CGCTG--GCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCG-TTCA 133360 | | || || || || |||| ||||| ||||| || | || || | | | Sbjct 97373 ACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTC--TGAAGCCTGA 97430 Query 133361 AGCG--CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA-AAACG 133417 |||| ||||| || ||| ||| | |||| ||| || || ||||| ||||| |||| Sbjct 97431 AGCGAATTCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACT 97490 Query 133418 ACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAA 133477 | || || || |||||||| ||| || | |||| ||| ||||| | |||| Sbjct 97491 A-GCTTCTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAATAGAACAA 97549 Query 133478 ACCGGCGGGGGTTTTCGCGCAACA--GCGGCTC 133508 | || | || || ||| | |||| ||||||| Sbjct 97550 AACGACTGGTGTCTTCCAGTAACAATGCGGCTC 97582 >seq72 Length=85273 Score = 105 bits (116), Expect = 7e-18 Identities = 250/367 (68%), Gaps = 13/367 (4%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGT-CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 ||| ||| || ||||| | |||||||||| ||||| ||||| ||||| || |||||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || |||||||| |||||||| || | ||||| | ||||||||||| || ||| Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 || || || | || || || || || ||||| ||||| || || | |||| || Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGC-AGA 75796 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCG 133125 || | ||||| ||| ||||||| ||| || | | | ||||| || ||| Sbjct 75797 AGACT--CAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCC 75854 Query 133126 ATGGCGTTCAA--CAAACGGAGTTTCTCTTCC-GAGGAACGC--ACGTAGGTGTCGATGA 133180 || || ||||| |||| ||| || |||| ||| | | | | || |||||||| | Sbjct 75855 ATTGC-TTCAAAGTAAAC-GAG--CCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 75910 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | |||||| |||| || || | || ||||| || || ||||| || || || || | Sbjct 75911 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 75970 Query 133241 GCGCCTC 133247 | || || Sbjct 75971 GTGCTTC 75977 >seq82 Length=95658 Score = 95.1 bits (104), Expect = 1e-14 Identities = 248/367 (68%), Gaps = 16/367 (4%) Strand=Plus/Minus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 ||| ||| || ||||| ||||||||||| ||||| ||||| ||||| || |||||| | Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAA--CTGCC 133004 | |||||||| |||||||| || | |||| | ||||||||||| | ||| || Sbjct 94697 ATGTCAAGCCTGGCATGAGACC---TCTTTTCAACCAAAATATGG-AACAAAAGGAATCC 94642 Query 133005 CGAAAAGAAGACGCCCTC-GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT 133063 ||| || || | || || || || || || || ||||| || || | |||| || Sbjct 94641 CGAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGC-A 94583 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 || | ||||| ||| ||||||| ||| || | | | ||||| || || Sbjct 94582 GAAGACT--CAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 94525 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCC-GAGGAACGC--ACGTAGGTGTCGATGA 133180 | || || ||||| || ||| || |||| ||| | | | | || |||||||| | Sbjct 94524 CCATTGC-TTCAAATAAACGAG--CCTTTTCCTGAGCATCTCTTATATATGTGTCGATAA 94468 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 | |||||| |||| || || | || ||||| || || ||||| || || || || | Sbjct 94467 GTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATC 94408 Query 133241 GCGCCTC 133247 | || || Sbjct 94407 GTGCTTC 94401 >seq77 Length=161124 Score = 89.7 bits (98), Expect = 5e-13 Identities = 168/239 (70%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCA-TCACCG-TCGACGTCGAGGCC 38300 |||||| ||||||||||| || || || || || |||| ||| | | || || ||| || Sbjct 113826 AATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCC 113767 Query 38301 ACCGAC-AGCGTGCA-AACGCTTAAA--GAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | || | || | ||| | || ||| | || | ||||| || || |||||| | Sbjct 113766 TCAGAATATAGTTCCGAACTGTCAAGTCGAAGATATACAAGACAAGGAAGGTATTCCCCC 113707 Query 38357 CGACCAACAGCGGCTCATTT---ACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 ||||| || || | |||| | | | | |||||| |||| || | ||||| ||| Sbjct 113706 AGACCAGCAACGTTTGATTTTGCATGGGAGTAAACAGTTGGAAGATGGTCGCACTCTCTC 113647 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTG-AGAGGCGGC 38471 ||||||||||| |||||||| | || || || |||||| |||||||| ||||| ||| Sbjct 113646 AGACTACAACATTCAAAAGGAGTCTACTCTTCACTTGGTGTTGCGTTTGAAGAGGTGGC 113588 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCA-TCACCGTCGACGTCGAGGCCA 38301 ||||||||||||||| || || || || || || |||| | || | || || ||| || Sbjct 114520 AATGCAAATATTCGTGAAGACTCTTACTGGGAAGACCATTTACTCTTGAAGTGGAGCCCT 114461 Query 38302 CCGACAGCGTGCAAACGCTTAAAG-AAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| ||| ||| || || | ||||| || || |||||| | ||| Sbjct 114460 CAGACACTATTGAAAAACTTTAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGAC 114401 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | |||| || || |||||| |||| | | || || ||| | |||||| Sbjct 114400 CAACAACGTTTGATTT-TGCTGGGAAACAGTTGGAGCATGGTCGTACTCTCGA-GACTAC 114343 Query 38421 AACA--TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| | |||||||| | || || || ||||| | ||| |||| || || Sbjct 114342 AACAGCTTCAAAAGGAGTCTACTCTTCACTTGGTCTTACGTCTGAGGGGTGG 114291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172068497280