Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq72 125 9e-24 seq82 105 8e-18 seq66 89.7 6e-13 >seq72 Length=85273 Score = 125 bits (138), Expect = 9e-24 Identities = 335/503 (67%), Gaps = 12/503 (2%) Strand=Plus/Minus Query 101816 TTGGACTGCTGAAGAGGTA-GATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATG 101874 ||||||||||||||| | || | ||| |||||||| |||||||| | | | || Sbjct 76143 TTGGACTGCTGAAGAAATCCGACTTGTCAGGTGATTTGGAAGATTGGAAAAAGTTGACTG 76084 Query 101875 AAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTG 101934 | ||||| | || || | | |||||||||||||| || ||||| || | Sbjct 76083 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGATGGTATCG 76024 Query 101935 TTTTTGAGAATAT--CAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATC 101992 |||| |||||| | || || | |||| | || || ||| ||||||| ||| Sbjct 76023 TTTTGGAGAATCTTGCAGAAAGA--TTTGTCGG-GATGTTCAAATTCCTGAAGCACGATG 75967 Query 101993 TTTCTATGCGTATCA-ATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 102051 |||||||| | ||| || || | |||| | ||| || || || | ||| | Sbjct 75966 TTTCTATGGATTTCAGATAGCA-ATGGAAAATATCCATTCAGAAACGTATTCTCTACTTA 75908 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCT-CTTTGAAGCCATCCAAACA 102110 | |||| ||||| | |||| | || ||| | | ||||||||| || || | Sbjct 75907 TCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTACTTTGAAGCAATGGAACGA 75848 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 102170 |||| |||||| | |||||||| | |||||| |||| ||| |||| | || | Sbjct 75847 ATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCT---TCTGCT 75791 Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || |||||||| || || | || ||||| || || || || || ||||| |||||| Sbjct 75790 TCGTTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCGGGTTCC 75731 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || || | || | |||| | || ||| |||||||||||||||| | || |||||| Sbjct 75730 TTTTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAAC 75671 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 ||||| || || | || ||||| Sbjct 75670 GAGCTGATTTCAAGGGATGAGGG 75648 >seq82 Length=95658 Score = 105 bits (116), Expect = 8e-18 Identities = 334/505 (66%), Gaps = 17/505 (3%) Strand=Plus/Plus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAG-GATTTGGACGATTGGAAGACTCTAAATG 101874 ||||||||||||||| | || | ||| |||||||| |||||||| | | | || Sbjct 94234 TTGGACTGCTGAAGAAATCGACTTGTCAGGCTGATTTGGAAGATTGGAAAAAGTTGACTG 94293 Query 101875 AAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTG 101934 | ||||| | || || | | |||||||||||||| || ||||| || | Sbjct 94294 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGATGGTATCG 94353 Query 101935 TTTTTG-AGAATAT--CAATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGAT 101991 |||| | ||||| | || || | |||| | || || ||| ||||||| ||| Sbjct 94354 TTTTGGGAGAATCTTGCAGAAAGA--TTTGTCGG-GATGTTCAAATTCCTGAAGCACGAT 94410 Query 101992 CTTTCTATGCGTATCA-ATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTC 102050 |||||||| | ||| || || | |||| | ||| || || || | ||| Sbjct 94411 GTTTCTATGGATTTCAGATAGCA-ATGGAAAATATCCATTCAGAAACGTATTCTCTACTT 94469 Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 || |||| ||||| | |||| | || ||| | | |||||||| || || | Sbjct 94470 ATCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTATTTGAAGCAATGGAACGA 94529 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGT 102170 |||| |||||| | |||||||| | |||||| |||| ||| |||| | || | Sbjct 94530 ATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCT---TCTGCT 94586 Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTT-GAGGGTATCTTCTTCTCTGG-TT 102228 || |||||||| || || | |||||||| ||| || || || || ||||| || || Sbjct 94587 TCGTTTGCTGAACGTCTGGTAGCATTTGCTGCGGTTAGAAGGAATATTTTTCTCGGGATT 94646 Query 102229 CCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCA 102288 |||| || | || | |||| | || | |||||||||||||||| | || |||| Sbjct 94647 CCTTTTGTTCCATATTTTGGTTGAAAA---GAGGTCTCATGCCAGGCTTGACATTTTCCA 94703 Query 102289 ACGAGCTTATCTCTCGTGACGAGGG 102313 ||||||| || || | || ||||| Sbjct 94704 ACGAGCTGATTTCAAGGGATGAGGG 94728 >seq66 Length=178311 Score = 89.7 bits (98), Expect = 6e-13 Identities = 309/469 (66%), Gaps = 16/469 (3%) Strand=Plus/Plus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAA-TG 101874 ||||||||||||||| | || | ||| |||||||| || ||||| | | | || Sbjct 7858 TTGGACTGCTGAAGAAATCGACTTGTCAGGTGATTTGGAAGACTGGAAAAAAGTTGACTG 7917 Query 101875 AAAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGA---TGGAA 101931 | ||||| | || || | | |||||||||||||| || || ||| | Sbjct 7918 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGAGTATGGTA 7977 Query 101932 TTGTTTTTGAGAATATCA-ATAACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGA 101990 | ||||| |||||| | | || | |||| | || || ||| ||||||| || Sbjct 7978 TCGTTTTGGAGAATCTTGCAGAAAGATTTTGTCGG-GATGTTCAAATTCCTGAAGCACGA 8036 Query 101991 TCTTTCTATGCGTATCA-ATGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACT 102049 | |||||||| | ||| || || | |||| | ||| || || || | ||| Sbjct 8037 TGTTTCTATGGATTTCAGATAGCA-ATGGAAAATATCCATTCAGAAACGTATTCTCTACT 8095 Query 102050 CATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAAC 102109 || |||| ||||| | |||| | || ||| | | |||||||| || || Sbjct 8096 TATCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTATTTGAAGCAATGGAACG 8155 Query 102110 AGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGA--AGTGGTTTGATACAAAGTCG 102167 | |||| |||||| | |||||||| | |||||| ||| | ||| |||| | || Sbjct 8156 AATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAGAAATGGATTGAGTCT---TCT 8212 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA-GGGTATCTTCTTCTCTGG 102226 ||| |||||||| || || | || ||||| ||||| ||| || || ||||| || Sbjct 8213 GCTTCGTTTGCTGAACGTCTGGTAGC-TTTGCTGCGGTTGAAGGGAATATTTTTCTCGGG 8271 Query 102227 TTCCTTCTGCGCT-ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGG 102274 |||||| || || || | |||| | || ||| |||||||||||||||| Sbjct 8272 TTCCTTTTGTTCTCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGG 8320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741492164240