Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq72 123 3e-23 seq82 104 3e-17 seq66 104 3e-17 >seq72 Length=85273 Score = 123 bits (136), Expect = 3e-23 Identities = 334/503 (66%), Gaps = 10/503 (2%) Strand=Plus/Plus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||||||||| | ||||| || || || || || | ||||||||||||||| | ||| Sbjct 75647 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTT 75706 Query 117351 CTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAA 117410 ||||||||| | || | || || || || ||||| || || || || || ||||| Sbjct 75707 TTTCAACCAAAATATGGAACAAAAGGAACCCGAGAAAAATATTCCTTCTACCGCAGCAAA 75766 Query 117411 CGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTT 117470 || | || || || || || || ||| | |||| |||||||| |||||||| Sbjct 75767 AGCTACCAGACGTTCAGCAAACGAAGCAGA---AGACTCAATCCATTTCAGAGCCCATTT 75823 Query 117471 CGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA-TAACTGCTTCTTTTCAG 117529 || |||||||||||||| || | || || |||||||| ||| | |||||| Sbjct 75824 GGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTCAAAGTAAACGAGCCTTTTCCT 75883 Query 117530 ATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCAT 117589 |||| | || ||| |||| || | | ||||| ||||| ||| | |||| Sbjct 75884 GAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATATTTTCCA 75943 Query 117590 TATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAAA 117648 | || || ||| || | ||||| | || ||||| || || || || ||| ||| Sbjct 75944 T-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC--CCGACAAA 76000 Query 117649 TTGTTAT-TGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGTA 117707 | || | | |||||| ||||| || ||||| || |||||||||||||| | | Sbjct 76001 TCTTTCTGCAAGATTCTCCAAAACGATACCATCTGAGGAAGCAAAGAATGCCAATACATG 76060 Query 117708 CTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATCTTTGGACAA 117767 || || | ||||| | || ||| | ||||| || || | ||| ||||| Sbjct 76061 AGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAATCTTCCAAATCACCTGACAA 76120 Query 117768 ATC-AACTTCTTCCGCAGTCCAA 117789 || | |||||| ||||||||| Sbjct 76121 GTCGGATTTCTTCAGCAGTCCAA 76143 >seq82 Length=95658 Score = 104 bits (114), Expect = 3e-17 Identities = 333/505 (66%), Gaps = 15/505 (3%) Strand=Plus/Minus Query 117291 ACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTT 117350 ||||||||| | ||||| || || || || || | ||||||||||||||| | | Sbjct 94729 ACCCTCATCCCTTGAAATCAGCTCGTTGGAAAATGTCAAGCCTGGCATGAGACCTC---T 94673 Query 117351 CTTCAACCAATAAATAGCGCAGAATGAC-CCGGAGAAGAAGATACCCTCCACACAC-GCA 117408 ||||||||| | || | || || || || ||||| || || || || | | | ||| Sbjct 94672 TTTCAACCAAAATATGGAACAAAAGGAATCCCGAGAAAAATATTCCTTCTAACCGCAGCA 94613 Query 117409 AACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCAT 117468 || || | || || || || || || ||| | |||| |||||||| |||||| Sbjct 94612 AATGCTACCAGACGTTCAGCAAACGAAGCAGAA---GACTCAATCCATTTCAGAGCCCAT 94556 Query 117469 TTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCA 117528 || || |||||||||||||| || | || || ||||||||||| | |||||| Sbjct 94555 TTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTGCTTCAAATAAACGAGCCTTTTCC 94496 Query 117529 GATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCA 117588 |||| | || ||| |||| || | | ||||| ||||| ||| | |||| Sbjct 94495 TGAGCATCTCTTATATATGTGTCGATAAGTAGAGAATACGTTTCTGAATGGATATTTTCC 94436 Query 117589 TTATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGCACTTCATCCGCAAA 117647 | || || ||| || | ||||| | || ||||| || || || || ||| || Sbjct 94435 AT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCAGGAATTTGAACATC--CCGACAA 94379 Query 117648 ATTGTTAT-TGATATTCT-CAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATG 117705 || || | | ||||| | ||||| || ||||| || |||||||||||||| | Sbjct 94378 ATCTTTCTGCAAGATTCTCCCAAAACGATACCATCTGAGGAAGCAAAGAATGCCAATACA 94319 Query 117706 TACTTTATGAATTTCTTTTCATTTTCATTCAGGGTCTTCCAGTCGTCAAGATC-TTTGGA 117764 | || || | ||||| | || ||| | ||||| || || | ||| || Sbjct 94318 TGAGAGATAAAGTGGCGTTCATCTGCAGTCAACTTTTTCCAATCTTCCAAATCAGCCTGA 94259 Query 117765 CAAATCAACTTCTTCCGCAGTCCAA 117789 ||| || | |||||| ||||||||| Sbjct 94258 CAAGTCGATTTCTTCAGCAGTCCAA 94234 >seq66 Length=178311 Score = 104 bits (114), Expect = 3e-17 Identities = 314/471 (67%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 117330 GCCTGGCATGAGACCCCGCTTCTTCAACCAATAAAT-AGCGCAGAATGACCCGGAGAAGA 117388 ||||||||||||||| | ||| ||||||||| | || || || || || || ||||| | Sbjct 8321 GCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCGAGAAAA 8262 Query 117389 AGATACCCTCCACACAC-GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTG 117447 | || |||| || | | ||||| || | || || || || || || ||| | Sbjct 8261 ATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCAGAA---GAC 8206 Query 117448 TCAAACCATTTC--ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGG 117505 |||| ||||||| | |||||||| || |||||||||||||| || | || || | Sbjct 8205 TCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCCATTG 8146 Query 117506 CTTCAAATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAAT 117565 |||||||||| | |||||| |||| | || ||| |||| || | | |||| Sbjct 8145 CTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTAGAGAAT 8086 Query 117566 ATGTTTCGCCATGAACCATTTCATTATGGCAT-TGATATGCGTAGAATGAGCGCGCTTCG 117624 | ||||| ||| | |||| | || || ||| || | ||||| | || ||||| Sbjct 8085 ACGTTTCTGAATGGATATTTTCCAT-TGCTATCTGAAATCCATAGAAACATCGTGCTTCA 8027 Query 117625 CTTATCTGCACTTCATCCG-CAAAATTGTTAT-TGATATTCTCAAAAACAATTCCA---T 117679 || || || || ||| |||||| || | | |||||| ||||| || ||| | Sbjct 8026 GGAATTTGAACATC--CCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCATACT 7969 Query 117680 CGGACCCAGCAAAGAATGCCAGGATGTACTTTATGAATTTCTTTTCATTTTCATTC-AGG 117738 | || |||||||||||||| | | || || | ||||| | || || | Sbjct 7968 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 7909 Query 117739 GTCTTCCAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCAA 117789 | |||||||| || | ||| ||||| || | |||||| ||||||||| Sbjct 7908 TTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAA 7858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979937153080