Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq17 423 2e-113 >seq17 Length=139726 Score = 423 bits (468), Expect = 2e-113 Identities = 707/999 (71%), Gaps = 25/999 (3%) Strand=Plus/Plus Query 181434 TTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTG-TGGGCTGGTCTGGACT-ACTTCT 181491 ||||||| ||||| ||||| || |||||||| ||| | || ||||| || | | || Sbjct 27241 TTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTAC 27300 Query 181492 TTTTCCCACTGCTTAT---CTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTAC 181548 |||||| | | || || || | || | ||| | || || || ||||| ||||| Sbjct 27301 TTTTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTT-GTTAC 27359 Query 181549 GTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGC 181608 || ||||| || || || || || ||||| || | || || |||||| | || || Sbjct 27360 TTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGC 27418 Query 181609 GGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCT 181666 || || |||| ||||| | |||||| || ||| | | ||| ||| |||| || Sbjct 27419 TGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCA 27475 Query 181667 GAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCG 181726 |||||||| || ||||| | ||| ||| |||| || | ||| | ||| || Sbjct 27476 GAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCT 27535 Query 181727 CTCCACGGAGCCTTCGCTCTTA-TCGGTTTTATGCTCAGGCAATTTGAACTTGCTCGTCT 181785 | || || || || | ||| | |||||| | | | ||||||||| | || | | Sbjct 27536 TTACATGGTGCTTTTGGAATTAATAGGTTTTGTTTAC-GTCAATTTGAAATAGCAAGATT 27594 Query 181786 AATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTC 181845 | | ||||| |||| || ||||| || |||||||| || || ||||| || || || || Sbjct 27595 AGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTT-GTTTC 27653 Query 181846 TGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGT 181905 |||||||| || ||||| || |||||| | |||||||| |||| || ||||| || || Sbjct 27654 AGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCCTAGTTTTGGAGT 27711 Query 181906 CGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCC 181965 || || || || | || || | || | || ||||| ||||| ||||| | ||||| Sbjct 27712 TGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATCC 27770 Query 181966 CTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGG 182025 ||||||||||||||||||||||| || || ||||| |||||| | | || ||||| || Sbjct 27771 ATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATGG 27830 Query 182026 TGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATT 182085 | || || || ||||| | | | |||| || || || |||||||||| ||| || Sbjct 27831 AGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTTT 27890 Query 182086 CGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCA 182145 |||| ||| ||||||||| ||||||||||||||||| || || || ||||| || Sbjct 27891 TACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACA 27949 Query 182146 GATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTT--ATGCTCTTTGTT 182203 || || ||| |||| ||| ||||| || ||| | ||||||||| ||||| ||||| Sbjct 27950 AAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTG 28007 Query 182204 CCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGT 182263 || |||| || | ||||||||||| || |||||||| || ||||| | || | ||| Sbjct 28008 CCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGT 28067 Query 182264 GCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTC 182323 || ||||| || || || |||||| | | || |||| || ||||| || || || || Sbjct 28068 GCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTT 28127 Query 182324 TACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGA-TCA 182382 || || || || | ||| | ||||||||| | | |||||| | ||| || || ||| Sbjct 28128 TATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCA 28187 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACC 182421 ||||||||| || ||||| ||||| ||||| || ||||| Sbjct 28188 ACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACC 28225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610395907294680