Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq17 435 4e-117 seq81 96.9 4e-15 >seq17 Length=139726 Score = 435 bits (482), Expect = 4e-117 Identities = 745/1060 (70%), Gaps = 48/1060 (5%) Strand=Plus/Plus Query 170519 AAGGGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCA-TAG 170577 ||| |||| || ||| | |||| || ||| |||| | ||||| |||||||| | | | Sbjct 27221 AAGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTG 27280 Query 170578 GATGGTCTGGTCTT--TTACTTCTGCCTTGTGCATA---CCTATCAATCGGTGGTTGGTT 170632 ||||||| ||| | |||||| | |||||| | || |||| | | || | |||||| Sbjct 27281 GATGGTCAGGTTTGAATTACTTTT-CCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTT 27339 Query 170633 CTTAGGGACTACCTTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGA 170692 ||| || || || ||||| || |||||||| |||||| | ||||| || ||| | || Sbjct 27340 TACAGGTACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGA 27398 Query 170693 GGGATGTAACTTCCTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCT 170752 |||||||| || |||| || ||||| || | |||| | ||||| || | Sbjct 27399 AGGATGTAATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATT 27457 Query 170753 TCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGG 170812 || || | |||||||| ||||| |||||| ||| | | |||| ||| | ||||| Sbjct 27458 ACTATTT-TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGG 27516 Query 170813 TTTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCA-TAGGTTTCATGCTCA-GA 170870 |||||||| ||| ||| |||||||| | |||||| | | ||||||| || | | | Sbjct 27517 TTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGT 27574 Query 170871 CAATTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCT 170930 |||||||| || ||| || | ||||| || ||||| || || ||| | || || || | Sbjct 27575 CAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGA 27634 Query 170931 GTTATCGCAGTCTTCACTAGCA-TCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTT 170989 || ||||| || | || | ||||| || |||||||| || || |||||||| Sbjct 27635 CCAATTGCAGTTTTGTTT--CAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT 27692 Query 170990 CTTCGCACCATCATTCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTT 171049 | || || || || || ||||| || ||| | | ||| ||||| | ||||| || Sbjct 27693 TT--GCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTT 27749 Query 171050 CCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGC 171109 ||| ||| || || |||||||| || |||||||||||||| |||||||| |||||||| Sbjct 27750 CCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGC 27809 Query 171110 ATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGT 171169 |||||| || || |||||||| ||||| || | || || || | |||||| | Sbjct 27810 ATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGA------TGG 27863 Query 171170 TTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGA 171229 | ||| |||| || ||| | || ||| || ||||| ||| Sbjct 27864 CGAAGCTGCTAAT---------------ACTTTCAGAGCTTTTACACCAACACAATCAGA 27908 Query 171230 AGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTT 171289 ||||||||| ||| ||||||| || | || |||||||| || |||||| ||||||| Sbjct 27909 AGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACAAAT-TTTGGTGTTGCTTT 27966 Query 171290 CTCTAACAAAAGATTTTTACACTTCCTT--ATGTTGTTCGTTCCTGTCATGGGTATGTGG 171347 ||||| ||||||| |||| ||| || ||| | || || || || | || | ||| Sbjct 27967 -TCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGG 28025 Query 171348 ACATCATCTATAGGTATCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCT 171407 ||| ||||| ||||| |||| || ||| | || | | ||||| ||||| || ||| Sbjct 28026 ACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGTGCATATGATTTCGTTTCT 28085 Query 171408 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTT 171467 ||||| || | || ||||| || ||||| || || || || || ||||| ||| |||| Sbjct 28086 CAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTC 28145 Query 171468 CTTAATGAAGGTATGAGAGCATGGATGTCATCAGTTGA-CCAACCACATGAGAACTTCGT 171526 || ||||||||||| |||||||||||| || || || ||||||||||| || || || Sbjct 28146 CTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCAACCACATGA-AAATTTGT 28204 Query 171527 ATTCCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAA 171566 ||||||||| || || |||||| | || || || |||||| Sbjct 28205 ATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAA 28244 >seq81 Length=117899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||| ||||||| || | ||||||||||||| |||| ||||||||||||||||| ||| Sbjct 18547 GATTTTGCTGTCGGATCCACGCAAAGGTTTGGTGTTCCAATGGGATATGGAGGTCCACAT 18488 Query 153807 GCTGCATTCTTTGCAACAACAGA 153829 ||||| ||||||||||||| ||| Sbjct 18487 GCTGCTTTCTTTGCAACAAAAGA 18465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579211952901280