Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq17 473 1e-128 >seq17 Length=139726 Score = 473 bits (524), Expect = 1e-128 Identities = 720/1003 (72%), Gaps = 23/1003 (2%) Strand=Plus/Plus Query 169307 TTCGATGTTCTCGATGACTGGCTCAAACGCGACCGCTTTGTATTCA-TTGGTTGGTCTGG 169365 |||||| | | ||||| ||||| ||||| || ||||||||||| | |||| ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 169366 TCT-ACTTCTTCTTCCCACTGCCTAT---CTTGCTATTGGAGGGTGGCTCACTGGTACAG 169421 | | | || | |||| | |||| || || | || | ||| | || |||||| Sbjct 27291 TTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAA 27350 Query 169422 CGTTTGTTACTTCCTGGTACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACT 169481 | ||||||||||| ||||| || || || | ||||| ||| |||||||| ||| | Sbjct 27351 C-TTTGTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATT 27409 Query 169482 TCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTAT 169541 | | |||||||| || | ||||| | ||||||||||||| | || || ||| Sbjct 27410 TT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TAT 27467 Query 169542 GGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACT 169601 |||| |||||||| ||||| ||||| | | ||||||||| | || ||| | |||| | Sbjct 27468 GGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACAT 27527 Query 169602 TTGTAGCACTTCATGGTGCATTTGCA-TTGATTGGTTTCATGCTTAGG-CAGTTTGAATT 169659 || ||| | |||||||| |||| | || || ||||| || ||| | || |||||| | Sbjct 27528 TTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAAT 27585 Query 169660 GGCACGTCTTATTGGCATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGT 169719 ||| | | | || || | || |||||||| || || || || || || ||||| || Sbjct 27586 AGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGT 27645 Query 169720 ATTTGTCAGTGTCTTTCTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTC 169779 ||||| || |||||||| || ||||||||||| | ||||| ||||||| Sbjct 27646 -TTTGTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCCTAG 27702 Query 169780 CTTTGGAGTATCAGCAATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGAC 169839 |||||||| |||| ||||| || || | || || ||||||| ||||| |||||||| Sbjct 27703 TTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGAC 27761 Query 169840 GTTGAATCCATTCCACATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGC 169899 || ||||||||||| ||||||||||| || ||||| | || |||||||| | | || Sbjct 27762 TTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGC 27821 Query 169900 TATCCATGGTGTTACAGTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTT 169959 ||| ||||| | || ||||| || || || | |||||| || || || |||||||| Sbjct 27822 TATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTT 27881 Query 169960 CAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTT 170019 || || ||| | ||||| |||||| |||||||| ||||| || || || || || Sbjct 27882 CAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TT 27940 Query 170020 CTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCATT--TTTTCATG 170077 ||||| || || || ||| |||| |||||||| || | ||||| |||| ||| ||| Sbjct 27941 TTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATG 27998 Query 170078 TTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTC 170137 | |||||||| |||| || | |||||| |||||||| ||||| || ||||| | Sbjct 27999 CTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTA 28058 Query 170138 AATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTT 170197 ||| | ||||| || |||||||| ||| || | | || ||||| |||||||||||| Sbjct 28059 AATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTT 28118 Query 170198 GAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCT 170257 || ||||| || || ||||| | || | |||||||| | | |||||| ||||| | Sbjct 28119 GAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACA 28178 Query 170258 GCTGA-TCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTT 170299 || ||||||||||||||| || | |||||||| || ||| Sbjct 28179 CAAGATTCAACCACATGAAAA-TTTGTATTCCCAGAGGAGGTT 28220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574472759832360