Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq17 432 4e-116 >seq17 Length=139726 Score = 432 bits (478), Expect = 4e-116 Identities = 714/1008 (71%), Gaps = 33/1008 (3%) Strand=Plus/Plus Query 165194 TTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTG-TTGGTTGGTCTGG 165252 |||||| | | ||||| ||||| ||||| ||||| || || ||| |||| ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 165253 --------ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGG 165304 |||| | ||| |||| | | || | ||| |||| |||| |||| || Sbjct 27291 TTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGGTTTACAGGT 27346 Query 165305 ACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGC 165363 || ||||| | || |||||||||||| || || || ||| ||| | || || || Sbjct 27347 ACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 27405 Query 165364 AAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCT 165423 || ||| | ||||| ||||| || | || ||| | |||||| || || | || | Sbjct 27406 AA--TTTTTAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATT 27463 Query 165424 TCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTG 165483 | | ||||| || || |||||||| ||||| || ||| ||| |||| || | || Sbjct 27464 T-TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATG 27522 Query 165484 GGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCT-AATTGGTTTCATGCTT-CGTCAGTTT 165541 | | ||| || | || || ||||| | | ||| ||||| || || ||||| ||| Sbjct 27523 GACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTT 27580 Query 165542 GAATTAGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATC 165601 ||| ||||| | | | || || | || || ||||| || || || || || || || Sbjct 27581 GAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATT 27640 Query 165602 GCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCT 165661 || ||||| ||| || ||||| || || || || || ||| | |||||||||| ||| Sbjct 27641 GCAGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCT 27697 Query 165662 CCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAAC 165721 || ||| || || ||||| ||||| || || || | || | ||||| ||||||||| Sbjct 27698 CCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAAC 27756 Query 165722 TGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTT 165781 ||||| || ||||| || ||||||||||||||||| || || || ||||| ||||| | Sbjct 27757 TGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTG 27816 Query 165782 TCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAAT 165841 | || || ||||| | || ||||| ||||| | | | ||||||| || | ||| ||| Sbjct 27817 TGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAAT 27876 Query 165842 ACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAAC 165901 ||||||| || ||| | || ||| |||||||| || ||||||||||| || || Sbjct 27877 ACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAAT 27936 Query 165902 CGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTT 165961 ||||| ||||| || || || ||| |||| ||| |||||| || ||| | ||||||||| Sbjct 27937 CGTTT-TGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTT 27993 Query 165962 --ATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTG 166019 ||||| ||||| || |||| || | ||||||||||| || |||||||| || |||| Sbjct 27994 GAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTG 28053 Query 166020 CTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAG 166079 | | || | ||||| ||||| || || || ||||| | | || ||||| || |||| Sbjct 28054 CATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAG 28113 Query 166080 AGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGG 166139 | ||||||||||| || || ||||| | ||| | ||||||||| | | || ||| ||| Sbjct 28114 AATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGG 28173 Query 166140 CACCAGTCGA-TCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTT 166186 || || || |||||| ||||| || ||||| ||||| || || ||| Sbjct 28174 CAACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTT 28220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556923985497480