Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq17 421 8e-113 seq81 89.7 6e-13 >seq17 Length=139726 Score = 421 bits (466), Expect = 8e-113 Identities = 751/1067 (70%), Gaps = 53/1067 (5%) Strand=Plus/Plus Query 172941 AAGAGGTTGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCA-TCG 172999 |||||||| || ||| | |||| || ||| |||| | ||||| || ||||| | | | Sbjct 27221 AAGAGGTTTATTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTG 27280 Query 173000 GATGGTCTGGTCTT--TTACTTCTACCTTGTGCTTA---CCTTTCTATCGGTGGTTGGTT 173054 ||||||| ||| | |||||| | |||||| | || ||| | | || | |||||| Sbjct 27281 GATGGTCAGGTTTGAATTACTTTT-CCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTT 27339 Query 173055 CTTAGGAACTACCTTCGTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGA 173114 ||| || || || ||||| || |||||||| |||||| | || ||||| ||| | || Sbjct 27340 TACAGGTACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGA 27398 Query 173115 AGGAGCAAACTTTTTAACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCT 173174 |||| || |||||||| || ||||| || | |||| | ||||| || | Sbjct 27399 AGGATGTAA-TTTTTAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATT 27457 Query 173175 TCTGTTCCTTTGGGGACCTGAAGCACAAGGTTCATTCGTAC--GTTGGTTACAACTCGGA 173232 || || | |||||||| ||||| |||||| || ||| | |||| ||| | ||| Sbjct 27458 ACTATTT-TATGGGGACCAGAAGCTCAAGGTGATTT--TACTAGATGGTGTCAAATTGGA 27514 Query 173233 GGACTATGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCA-TAGGTTTCATGCTCCG 173291 || |||||| ||| ||| |||||||| | |||||| | | ||||||| | | || Sbjct 27515 GGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACG 27573 Query 173292 TCAGTTTGAGATCGCAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGC 173351 ||| ||||| || ||| || | ||||| || ||||| || || ||| | || || || | Sbjct 27574 TCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGG 27633 Query 173352 TGTTATCGCAGTCTTCACTAGCA-TCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGT 173410 || ||||| || | || | ||| | || || ||||| || || ||||||| Sbjct 27634 ACCAATTGCAGTTTTGTTT--CAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGT 27691 Query 173411 TCTTCGCACCTTCATTCGGTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTT 173470 | | || ||| || || || ||||| |||||| | | ||| ||||| | ||||| | Sbjct 27692 TTT--GCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCT 27748 Query 173471 TCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAG 173530 |||| ||| || || |||||||| || |||||||||||||| |||||||| ||||||| Sbjct 27749 TCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAG 27808 Query 173531 CATTACTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAC 173590 ||||| | || || |||||||| ||||| || | || || || | ||||| Sbjct 27809 CATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAG--------- 27859 Query 173591 AATATACTGAAGGTAAGATTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAG 173650 || |||| | | | ||| ||||||||||| ||| || ||||| || Sbjct 27860 ---ATGGCGAAGCT--GCT--AAT-----ACTTTCAGAGCTTTTACACCAACACAATCAG 27907 Query 173651 AAGAAACTTATAGTATGATTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCAT 173710 ||||||||||| ||| ||||||| || | || |||||||| || |||||| | || | Sbjct 27908 AAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACAAAT-TTTGGTGTTGC-T 27964 Query 173711 TTTCAAACAAAAGATTTTTACACTTCCT--CATGTTGTTCGTACCTGTCATGGGTATGTG 173768 |||| || ||||||| |||| ||| | ||| | || || || || | || | || Sbjct 27965 TTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATG 28024 Query 173769 GACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTTA-GAGCATACGACTTTGTAT 173827 |||| || || ||||| |||| |||||| |||| ||| | ||||| || || || | Sbjct 28025 GACAAGTTCTATTGGTATTATAGGACTTGCA-TTAAATTTACGTGCATATGATTTCGTTT 28083 Query 173828 CTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATAC 173887 ||||||| || | || ||||| |||||||| || || || || || ||||| ||| ||| Sbjct 28084 CTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTAC 28143 Query 173888 TTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTAGA-TCAACCACATGAGAACTTC 173946 | || ||||||||||| |||||||||||| || | ||| |||||||||||| || || Sbjct 28144 TCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCAACCACATGA-AAATTT 28202 Query 173947 GTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCACTTTAAATAAT 173993 ||||| ||||| || || |||||| | || || || |||| |||||| Sbjct 28203 GTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTT-AATAAT 28248 >seq81 Length=117899 Score = 89.7 bits (98), Expect = 6e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 158426 TTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTG 158485 ||||||| || | ||||||||||||| |||| |||||||| |||||||| ||||||| Sbjct 18543 TTGCTGTCGGATCCACGCAAAGGTTTGGTGTTCCAATGGGATATGGAGGTCCACATGCTG 18484 Query 158486 CATTCTTTGCAACAACAGA 158504 | ||||||||||||| ||| Sbjct 18483 CTTTCTTTGCAACAAAAGA 18465 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Minus Query 159635 TATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATG 159694 |||| | ||||| || ||| | |||||||| || ||| | || |||| || Sbjct 17007 TATACCCGGATGGAGCGAATATGAATGCACAAGTTGGTATTTGTTCACGG-GTGATATTG 16949 Query 159695 GTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAG 159754 | || ||||| ||||| | || |||||||||||||| ||||||||||| ||||| |||| Sbjct 16948 GAGCGGATGTTTGTCACTTGAATTTACATAAGACATTTTGTATTCCACACGGAGGAGGAG 16889 Query 159755 GTCCTGGCGTAGGTCCTATTG 159775 |||| || | || ||||||| Sbjct 16888 GTCCAGGTATGGGACCTATTG 16868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050339975120