Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq17 421 7e-113 >seq17 Length=139726 Score = 421 bits (466), Expect = 7e-113 Identities = 721/1020 (71%), Gaps = 27/1020 (3%) Strand=Plus/Plus Query 163633 GATGACTGGCTTAAGCGCGATCGTTTCGTATTTA-TTGGTTGGTCTGGATT--ACTACTT 163689 ||||| ||||| || || ||||| || ||||||| |||| ||||| || || | ||||| Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 163690 CTTCCCACTGCTTATA---TGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACG 163746 |||| | | || | | || | || | ||| |||| ||||||||||| ||||| Sbjct 27303 -TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTT-GTTACT 27360 Query 163747 TCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCG 163806 || ||||| || ||||| | || |||| ||| | || || ||||||| | || || Sbjct 27361 TCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGCT 27419 Query 163807 GCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAG 163866 || || |||| ||||| | |||||| || || | || || | ||||| || || Sbjct 27420 GCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TATGGGGACCAGAA 27478 Query 163867 GCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTC 163926 ||||| || ||||| | ||| ||| |||| || | |||| ||| || | Sbjct 27479 GCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTTTA 27538 Query 163927 CACGGAGCCTTTGCTCTCATT-GGTTTCATGCTT-CGGCAATTTGAACTTGCTCGCCTGA 163984 || || || |||| | | | ||||| || || || ||||||||| | || | | Sbjct 27539 CATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAATAGCAAGATTAG 27596 Query 163985 TTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTG 164044 | ||||| ||||| || ||||| || ||||| || || || ||||| || || ||| | Sbjct 27597 TAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTT-GTTTCAG 27655 Query 164045 TCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGG 164104 | ||||| || || || || || ||| | |||||||| | ||||| ||||||||| | Sbjct 27656 TATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGAGTTG 27713 Query 164105 CAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCT 164164 |||| ||||| ||||| | ||||| | ||||| || |||||||||||||| || || | Sbjct 27714 CAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATCCAT 27772 Query 164165 TCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAG 164224 ||||||||||||| |||||||| ||||| || |||||||| | | |||||||| |||| Sbjct 27773 TCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATGGAG 27832 Query 164225 TCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTG 164284 || || |||||||| || | ||||||||| ||| || || || || | || ||| Sbjct 27833 CAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTTTTA 27892 Query 164285 ATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGA 164344 | ||||| |||||| |||||||| ||||| || || || || || ||||| || | Sbjct 27893 CACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACAAA 27951 Query 164345 TCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATT--TTTTCATGTTGTTTGTGCC 164402 | || |||||||| |||||||| || | ||||| |||| ||| ||| | |||||||| Sbjct 27952 T-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTGCC 28009 Query 164403 TGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGC 164462 |||| || |||||||| |||||||| ||||| || ||||| | ||| | ||||| Sbjct 28010 AGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGTGC 28069 Query 164463 TTACGATTTTGTAAGTCAAGAGATTA-GAGCAGCAGAAGATCCTGAGTTCGAGACTTTCT 164521 || ||||| || |||||| |||| | || ||||| ||||| || || || || || | Sbjct 28070 ATATGATTTCGTTTCTCAAGA-ATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTTT 28128 Query 164522 ATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGA-CCAG 164580 |||| || || | | | || ||||| | | |||||| | ||| || || || Sbjct 28129 ATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCAA 28188 Query 164581 CCAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAATAA 164640 ||| ||| ||||| |||||||| || || | || | || ||||| ||||||||| Sbjct 28189 CCACATGAA-AATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAATAA 28247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557583184533400