Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq17 423 2e-113 >seq17 Length=139726 Score = 423 bits (468), Expect = 2e-113 Identities = 725/1028 (71%), Gaps = 33/1028 (3%) Strand=Plus/Plus Query 168483 TTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTG-TTGGTTGGTCTGG 168541 |||||| | | ||||| ||||| ||||| ||||| || || ||| |||| ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 168542 --------ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGG 168593 |||| | ||| |||| | | || | ||| |||| |||| |||| || Sbjct 27291 TTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGGTTTACAGGT 27346 Query 168594 ACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCA 168653 || |||| || || |||||||||||| || || || ||| ||| | || || Sbjct 27347 ACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 27405 Query 168654 AACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTT 168713 || ||| | ||||| ||||| | || ||| || |||||| || || | || || Sbjct 27406 AATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT 27464 Query 168714 CTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGG 168773 | ||||| || || || ||||| ||||| |||||||||||| ||||||| | ||| Sbjct 27465 -TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGG 27523 Query 168774 GCTTTTGTGGCGCTCCACGGGGCTTTCGCTCT-AATCGGTTTCATGCTT-CGTCAGTTTG 168831 | ||| || | || || ||||| | | ||| ||||| || || ||||| |||| Sbjct 27524 ACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTG 27581 Query 168832 AACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCG 168891 || | ||| | | | || || | || || ||||| || || || || || || || | Sbjct 27582 AAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTG 27641 Query 168892 CTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTC 168951 | ||||| ||| || ||||| || || || || || ||| | |||||||||| |||| Sbjct 27642 CAGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTC 27698 Query 168952 CATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACT 169011 | ||| || || |||| ||||| |||| || | || | ||||| |||||||||| Sbjct 27699 CTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACT 27757 Query 169012 GGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTT 169071 |||| | |||||||| |||||||||||||| || || || | || ||||| || | | Sbjct 27758 GGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGT 27817 Query 169072 CTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATA 169131 || |||||||| | || ||||| ||||| | | | ||||||| ||| || |||| Sbjct 27818 GCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATA 27877 Query 169132 CTTTCAAAGCATTTGACAGC-ACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAAC 169190 |||||| ||| ||| ||| | || || ||| || || |||||||||||||| || || Sbjct 27878 CTTTCAGAGC-TTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAAT 27936 Query 169191 CGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTT 169250 ||||| ||||| || || |||||| |||| || |||||| || ||| | ||||||||| Sbjct 27937 CGTTT-TGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTT 27993 Query 169251 --ATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTG 169308 ||||| ||||| || |||| || | ||||||||||| || |||||||| || |||| Sbjct 27994 GAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTG 28053 Query 169309 CTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAG 169368 | | || | ||||| ||||| || ||||| ||||| | | || ||||| ||||||| Sbjct 28054 CATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAG 28113 Query 169369 AGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAG 169428 | ||||| || || || || || || | ||| | || |||||| | | |||||| | | Sbjct 28114 AATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGG 28173 Query 169429 CACCTATTGA-TCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGT 169487 || | || |||||| ||||| || ||||| ||||| ||||| || | || || || Sbjct 28174 CAACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGA 28232 Query 169488 AATGCCCT 169495 |||||||| Sbjct 28233 AATGCCCT 28240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560607180110800