Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq17 466 2e-126 >seq17 Length=139726 Score = 466 bits (516), Expect = 2e-126 Identities = 736/1030 (71%), Gaps = 27/1030 (3%) Strand=Plus/Plus Query 183181 TTCGATGTCCTTGATGACTGGGTTAAACGCGATCGCTTTGTCTTTG-TGGGCTGGTCTGG 183239 |||||| | ||||||| ||| | ||||| ||||||||||| ||| | || ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 183240 ACTCC--TACTTCTTCCCACTGCTTAT---CTTGCCATTGGCGGTTGGCTTACTGGCACA 183294 | ||||| |||| | | || || ||| | |||| |||| |||| || ||| Sbjct 27291 TTTGAATTACTT-TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACA 27349 Query 183295 GCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAAC 183354 |||| ||||| ||||||||| ||||| | |||||||| ||| | ||||| ||| Sbjct 27350 ACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAAT 27408 Query 183355 TTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTT 183414 ||| | || || || || || | ||||| | |||||| || || | || || | Sbjct 27409 TTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TA 27466 Query 183415 TGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAAT 183474 ||||| || || ||||||| || ||| | ||||| ||| |||| || | |||| Sbjct 27467 TGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACA 27526 Query 183475 TTTGTGGCACTCCACGGTGCCTTTGCTCTCATT-GGTTTCATGCTT-CGACAGTTTGAAC 183532 ||| || | || ||||| |||| | | | ||||| || || || || |||||| Sbjct 27527 TTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAA 27584 Query 183533 TTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTG 183592 | || | || | || || | || || ||||| || || || || || || ||||| | Sbjct 27585 TAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAG 27644 Query 183593 TTTT-TGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCT 183651 |||| | ||||| ||| ||||| |||||||| || || || ||||| |||| ||| Sbjct 27645 TTTTGTTTCAGT--ATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCCT 27700 Query 183652 AGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGG 183711 ||||| || || ||||| ||||||||||| | || || | || || ||||| |||||| Sbjct 27701 AGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGG 27759 Query 183712 ACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGT 183771 || ||||| || |||||||||||||| |||||||| ||||| || |||||| || | | Sbjct 27760 ACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGC 27819 Query 183772 GCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACA 183831 ||||| ||||| | || ||||| ||||| || | ||||||||| ||| || || || Sbjct 27820 GCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACT 27879 Query 183832 TTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGT 183891 |||| || ||| | || ||| |||||| || ||||| ||||||||||| |||||| Sbjct 27880 TTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCGT 27939 Query 183892 TTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTT--A 183949 || ||||||||||| || || ||||| ||| ||||| | ||| | || |||||| | Sbjct 27940 TT-TGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAA 27996 Query 183950 TGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTC 184009 || | ||||| || || | || | ||| ||||||||| || || || ||||| Sbjct 27997 TGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCAT 28056 Query 184010 TTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAAT 184069 | ||| | ||||| |||||||| || |||||| | | || ||||| |||||||||| Sbjct 28057 TAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAAT 28116 Query 184070 TTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCAC 184129 |||| || || || || || || |||| || |||||||| || | |||||| | ||| Sbjct 28117 TTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAA 28176 Query 184130 CTTCTGA-TCAACCACATGAGAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAAT 184188 | || |||||||||||| || ||| |||| ||||||||||| ||||| | || ||| Sbjct 28177 CACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAT 28235 Query 184189 GCTCTTTGAT 184198 || |||| || Sbjct 28236 GCCCTTTAAT 28245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611695105394600