Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq17 475 4e-129 >seq17 Length=139726 Score = 475 bits (526), Expect = 4e-129 Identities = 738/1032 (72%), Gaps = 33/1032 (3%) Strand=Plus/Plus Query 166161 TTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTG-TTGGTTGGTCTGG 166219 |||||| | |||| || ||||| ||||| ||||| || || ||| |||| ||||| || Sbjct 27231 TTCGATTTAGTTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGG 27290 Query 166220 --------ACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTCACTGGG 166271 |||| | ||| |||| | | || | ||| |||| |||| | || || Sbjct 27291 TTTGAATTACTTTTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGGTTTACAGGT 27346 Query 166272 ACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGTTATCTGGAGGG-TGC 166330 || ||||| || || ||||||||||||||| | || |||| | || || || Sbjct 27347 ACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGT 27405 Query 166331 AAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTACTTCT 166390 || ||| | ||||| ||||| || | || ||| || |||||| || || |||| | Sbjct 27406 AA--TTTTTAACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATT 27463 Query 166391 TCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTG 166450 | | ||||| || || |||||||| ||||| || ||||| ||| ||||||| | || Sbjct 27464 T-TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATG 27522 Query 166451 GGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCT-AATTGGTTTCATGCTT-CGGCAGTTT 166508 | | ||| ||| | || |||||||||| | ||| ||||| || || || || ||| Sbjct 27523 GACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTT 27580 Query 166509 GAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTTTCTGGTCCTATT 166568 ||||| || | ||||||| ||| | || || |||||||| |||||||| || || ||| Sbjct 27581 GAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATT 27640 Query 166569 GCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCT 166628 || || || ||| || ||||| || || || || || ||| | |||||||||| ||| Sbjct 27641 GCAGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCT 27697 Query 166629 CCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAAC 166688 || ||| || || |||| ||||| |||| | | || | ||||| ||||| ||| Sbjct 27698 CCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAAC 27756 Query 166689 TGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGTGGTGCATTGCTT 166748 ||||| | || ||||| |||||||||||||| || || || || ||||| ||||| | Sbjct 27757 TGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTG 27816 Query 166749 TCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAAT 166808 | || || ||||| | || ||||| || || | | | ||||||| ||| || ||| Sbjct 27817 TGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAAT 27876 Query 166809 ACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAAC 166868 ||||||| || || | || ||| |||||||| ||||||||||||||||| || Sbjct 27877 ACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAAT 27936 Query 166869 CGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTT 166928 || | |||||| || || || ||| |||| ||| |||||| || ||| | ||||||||| Sbjct 27937 CGTT-TTGGTCACAAATTTT-GGTGTTGCTTTTC-TAATAAAAGATGGCTACATTTCTTT 27993 Query 166929 --ATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTG 166986 ||||| ||||| || |||| || | ||||||||||| || |||||||| || |||| Sbjct 27994 GAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTG 28053 Query 166987 CTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGATCCTG 167046 | | || | ||||| ||||| || ||||| |||||| || | || ||||||||||| | Sbjct 28054 CATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAG 28113 Query 167047 AGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGTTCTTGGATGG 167106 | ||||||||||| ||||| || || | ||| | ||||| ||||| | | ||||||| Sbjct 28114 AATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGG 28173 Query 167107 CAACTATCGA-TCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTTCCTAGAGGT 167165 |||| || |||||| ||||| | ||| |||||||| || |||||| | || | || Sbjct 28174 CAACACAAGATTCAACCACATGAAAATTT-GTATTCCCAGAGGAGGTTTTACCACGTGGA 28232 Query 167166 AACGCTCTCTAA 167177 || || || ||| Sbjct 28233 AATGCCCTTTAA 28244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563659975646080