Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq77 136 9e-27 seq36 134 3e-26 seq103 127 5e-24 >seq77 Length=161124 Score = 136 bits (150), Expect = 9e-27 Identities = 170/227 (75%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAA-TATTGTAATCGGCAAGAGTTCTCCCAT- 194986 || || | ||| ||||| ||||| ||||||| | ||||| || | ||||| | |||| Sbjct 114536 AAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT-CGAGAGTGCGACCATA 114594 Query 194987 -CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 |||| | ||| |||||||| || || | ||||| |||||||| ||||| ||||| ||| Sbjct 114595 CCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTGGGGGAATACCTTCCTTG 114654 Query 195046 TCTTGAATTTTTTGCTTGACG--TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAA 195103 ||||| || || |||||| |||||||| || || || ||||||||||| |||| Sbjct 114655 TCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGGCTCCACTTCAAGAGTAA 114714 Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTAC 195150 ||||| || || | ||| |||||||| | |||| |||| ||||| Sbjct 114715 TGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCA-TTATTGTTAC 114760 Score = 118 bits (130), Expect = 2e-21 Identities = 160/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAA--TATTGTAATCGGCAAGAGTTCTCCCAT 194986 || || | ||||||||| ||||| ||||||| | ||||| || | ||||| | |||| Sbjct 114306 AAGACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAGTCT-CGAGAGTACGACCAT 114364 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 || | ||| || || || || || | |||||||||||||| ||||| ||||| |||| Sbjct 114365 GCTCCAACTGTTTCCCAGCAAA-ATCAAACGTTGTTGGTCTGGGGGAATACCTTCCTTGT 114423 Query 195047 CTTGAATTTTTTGCTTGACG-TTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT-AAC 195104 |||| || || ||| | | || ||||| ||||| || ||||||||||| || || Sbjct 114424 CTTGTATCTTCGACTTAAAGTTTTTCAATAGTGTCTGAGGGCTCCACTTCAAGAGTAAAT 114483 Query 195105 CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| || || | ||| || ||||| | ||||||| Sbjct 114484 GGTCTTCCCAGTAAGAGTCTTCACGAATATTTGCATT 114520 Score = 105 bits (116), Expect = 1e-17 Identities = 160/221 (72%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAA--TATTGTAATCGGCAAGAGTTCTCCCAT 194986 || || | ||||||||| ||||| ||| ||| | ||||| || | ||||| | |||| Sbjct 113842 AAGACCAAGTGAAGAGTAGACTCCTTT-GAAGCTGTTGTAGTCTGAGAGAGTACGACCAT 113900 Query 194987 CTTCGAGCTGCTTACC----TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||| | ||| || || ||| || || | ||||| |||||||| ||||| ||||| Sbjct 113901 CTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAACGTTGCTGGTCTGGGGGAATACCTTCC 113959 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG-GGT 195101 |||||||| || || |||||| ||||| ||||| || ||||||||||| | | Sbjct 113960 TTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGGGCTCCACTTCAAGAGCT 114019 Query 195102 AAC-CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| || || | ||| |||||||| | |||||| Sbjct 114020 GACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114060 >seq36 Length=139094 Score = 134 bits (148), Expect = 3e-26 Identities = 166/221 (75%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | |||||| || ||||| ||||||||||| || || | |||||| | ||||| Sbjct 92209 CAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGAAAGAGTACGACCATC 92268 Query 194988 TTC-GAGCTGCTTACCTGCGAAGAT-AAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTG 195045 ||| || ||||| || || || || || ||||| |||||||||||||| ||||| ||| Sbjct 92269 TTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGGAGGAATTCCTTCCTTG 92328 Query 195046 TCTTGAATTTTTTGCTTGAC-GTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT--A 195102 ||||| || || |||||| |||||||| || || ||| ||||||||||| || | Sbjct 92329 TCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCTCCACTTCAAGAGTTGA 92388 Query 195103 A--CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||||| || || | || ||||| || | |||||| Sbjct 92389 AGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Score = 104 bits (114), Expect = 5e-17 Identities = 167/234 (71%), Gaps = 12/234 (5%) Strand=Plus/Plus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAG--AG 194977 || || | ||| || | |||||| || ||||| ||||||||||| || || | || | Sbjct 91786 CTCAGACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGGAAATCAC 91845 Query 194978 TTCT----CCCATCTTCGAGC---TGCTTACCTGCGAAGAT-AAGTCGTTGTTGGTCTGG 195029 || | || | ||| | ||||| || || || || || ||||| |||||||| Sbjct 91846 GACTAAAGCTGATTTCCGACCAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGG 91905 Query 195030 AGGAATGCCTTCTTTGTCTTGAATTTTTTG-CTTGACGTTCTCAATGGTGTCCGAACTTT 195088 ||| || ||||| || ||||| || || | ||||||||||||||| ||||| ||| | Sbjct 91906 AGGGATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCAATAGTGTCTGAAGGCT 91965 Query 195089 CCACTTCAAGGGT-AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||||| || || ||||| ||||| | || || || || | |||||| Sbjct 91966 CCACTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAATATCTGCATT 92019 >seq103 Length=203287 Score = 127 bits (140), Expect = 5e-24 Identities = 165/225 (73%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 194926 CTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCA 194985 ||||| || | ||| | ||||| || ||||||||||| || || | |||||||| || Sbjct 14172 CTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCGACAGAGTTCTTCCG 14231 Query 194986 TCTTCGAGCTGC--TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTT 195043 |||||||| ||| || || || || ||||| | |||||| || || || || ||||||| Sbjct 14232 TCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGGGGGTATACCTTCTT 14291 Query 195044 TGTCTTGAATTTTTTG-CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTC------A 195096 | ||||||| | |||| || || || || || || |||||| ||| || || Sbjct 14292 TATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTTCGACCTCTAACGTT 14351 Query 195097 AGGGTAAC-CGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | || |||||||||||||| ||||| || || | |||||| Sbjct 14352 AGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCAT 14396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109479936817739