Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq72 221 1e-52 seq82 199 4e-46 seq89 196 5e-45 seq66 188 8e-43 seq74 116 4e-21 >seq72 Length=85273 Score = 221 bits (244), Expect = 1e-52 Identities = 380/543 (70%), Gaps = 13/543 (2%) Strand=Plus/Plus Query 18953 ACATCAAACATGCAAAAT-CACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 ||| |||||||||||||| | ||||| | ||||| || || |||| || || ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||| || || ||||| || ||||| ||||| ||||| ||||| ||| ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 || || ||||| |||||||| || |||||||| || || | ||| || ||| | | || Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCA-AACGA--AGCA 75794 Query 19132 TTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCT 19191 | | |||||||||||| ||||| | || ||||| | | ||| || ||| || Sbjct 75795 GAAGACTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTCC 75854 Query 19192 ATAGAATTAAA-TA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 || | | ||| || || | | || | | |||| | | ||||| || || | Sbjct 75855 ATTGCTTCAAAGTAAACGAGCCTT---TTCCTGAGCATCTCTTATATATGTGTCGATAAG 75911 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 || | ||| |||||||||| |||||||| || || ||||||||||| || ||||||| Sbjct 75912 TAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCG 75971 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 |||||| | || || || || | || ||||||||| | | ||| || ||| || || Sbjct 75972 TGCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCAAAACGATACC 76030 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA 19427 ||| | ||||| ||||| |||||||| ||||| || |||||||| || || Sbjct 76031 ATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAA 76090 Query 19428 TGTATTCCAATCATTAATATCTTTAGATAAATC-TACTTCTTCAACTGTCCAAAAAGAAG 19486 | |||||||| | | ||| || || || | ||||||| | |||||||| |||| Sbjct 76091 CTTTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAATGAAG 76150 Query 19487 CCT 19489 ||| Sbjct 76151 CCT 76153 >seq82 Length=95658 Score = 199 bits (220), Expect = 4e-46 Identities = 377/544 (69%), Gaps = 17/544 (3%) Strand=Plus/Minus Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 ||| |||||||||||| || ||||| | ||||| || || |||| || || |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGA-TCCA 19071 |||| || || ||||| || |||||||| ||||| ||||| ||| ||| || ||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTCTTTTC---AACCAAAATATGGAACAAAAGGAATCCC 94641 Query 19072 GAAAAGAATATACCTTCTA-CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 || || ||||| ||||||| | || ||||| || || || | ||| || ||| | | | Sbjct 94640 GAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCA-AACGA--AGC 94584 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | | | |||||||||||| ||||| | || ||||| | | ||| || ||| || Sbjct 94583 AGAAGACTCAATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTTC 94524 Query 19191 TATAGAATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAA 19247 || | | ||||| || | | || | | |||| | | ||||| || || | Sbjct 94523 CATTGCTTCAAATAAACGAGCCTTTTCCTGAGC---ATCTCTTATATATGTGTCGATAAG 94467 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 || | ||| |||||||||| |||||||| || || ||||||||||| || ||||||| Sbjct 94466 TAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCG 94407 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATT-TTCATTAACTATTC 19366 |||||| | || || || || | || ||||||||| | | ||| | | ||| || | Sbjct 94406 TGCTTCAGGAATTTGAACATCCCGAC-AAATCTTTCTGCAAGATTCTCCCAAAACGATAC 94348 Query 19367 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA 19426 |||| | ||||| ||||| |||||||| ||||| || |||||||| || | Sbjct 94347 CATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCA 94288 Query 19427 ATGTATTCCAATCATTAATATC-TTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAA 19485 | | |||||||| | | ||| || || || | ||||||| | |||||||| ||| Sbjct 94287 ACTTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAATGAA 94228 Query 19486 GCCT 19489 |||| Sbjct 94227 GCCT 94224 >seq89 Length=114172 Score = 196 bits (216), Expect = 5e-45 Identities = 404/595 (68%), Gaps = 21/595 (4%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| |||||||| | || || |||| |||||| ||||| ||||| || | Sbjct 96966 CAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGGAAAAGGTCAGT 97025 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||||| || | ||| || ||||| ||||| ||| |||| || |||||||||||| Sbjct 97026 CCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAACCAGAAAAGAAT 97084 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || |||||||||||||| || | || || ||||| | | | || Sbjct 97085 ATCCCTTCGACCGCTGCAAAAGCAACCAGACGCTCGGCAAAACTATGAGAACACT--CGA 97142 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||||||||| | |||||| |||||| |||| || || || | | || || | | Sbjct 97143 ATCCATTTCAACGACCAATCCGCCTTC-TTTTCACGCAGGGAAGGTTTTCAATGGCAAAG 97201 Query 19201 AATAGATACATACGCTCATCT-----GTATCTTTAACATATGCATCTATCAATAAACTGT 19255 || || ||||| ||| ||| || ||| | ||||||| || | Sbjct 97202 AACAG---TCGACGCTTTTCTTCGACACCTCTCGAATATACGTGTCTATCAGCAACGCAT 97258 Query 19256 ACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTG 19315 ||||||| || || | |||||| || |||| ||||| || |||||||| | ||||| | Sbjct 97259 ACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAACAACGCGCTTCGG 97318 Query 19316 TTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCAT--CACT 19373 | |||||||| | | || | | |||| |||||||| || || |||| | Sbjct 97319 GGACTTGTACTTCGGTGCTGAAACGAGCTGCCAAGTTTTCATTCACGATGCCATACCCGA 97378 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTC----ATCTGAGGTTAATG 19429 ||| ||||| || || || || || || || || | ||| |||| | ||| Sbjct 97379 AGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCTGAAGCCTGAAGCGAAT- 97437 Query 19430 TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCT 19489 | |||||| | |||| ||| || || |||||||| |||||||| ||| ||| | Sbjct 97438 --TCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGTCCAGAAACTAGCTT 97495 Query 19490 CTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| ||| |||| | ||| || | | |||| ||||||||||| |||||| Sbjct 97496 CTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAATAGAACAAA 97550 >seq66 Length=178311 Score = 188 bits (208), Expect = 8e-43 Identities = 379/548 (69%), Gaps = 22/548 (4%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCT--ACTTATCAATT--CATTAGAAA 19012 ||||||||||||||| ||||| | ||||| || || || | || | || |||| Sbjct 8388 CAAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAA 8329 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATAT-AGAAGCAAATGATCCA 19071 |||| || || ||||| || ||||| ||||| ||||| ||||| |||| ||| || || Sbjct 8328 ATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCC 8269 Query 19072 GAAAAGAATATACC-TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC 19130 || || ||||| || ||| || || ||||| || || || | ||| || ||| | | | Sbjct 8268 GAGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCA-AACGA--AGC 8213 Query 19131 ATTATTATGAATCCATTTC--AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTC 19188 | | | |||||||||| || ||||| | || ||||| | | ||| || ||| Sbjct 8212 AGAAGACTCAATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 8153 Query 19189 TCTATAGAATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATC 19245 || || | | ||||| || | | || | | |||| | | ||||| || || Sbjct 8152 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGC---ATCTCTTATATATGTGTCGATA 8096 Query 19246 AATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACAT 19305 | || | ||| |||||||||| |||||||| || || ||||||||||| || |||||| Sbjct 8095 AGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACAT 8036 Query 19306 CTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATT 19365 | |||||| | || || || || | |||||||||||| | | ||| || ||| || Sbjct 8035 CGTGCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATA 7976 Query 19366 CCAT-CACT--AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAG 19422 |||| | || | ||||| ||||| |||||||| ||||| || |||||||| Sbjct 7975 CCATACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCA 7916 Query 19423 GTTAA-TGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAA 19481 || || | | ||||| || | | ||| || || || | ||||||| | |||||||| Sbjct 7915 GTCAACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 Query 19482 AGAAGCCT 19489 ||||||| Sbjct 7855 TGAAGCCT 7848 >seq74 Length=163707 Score = 116 bits (128), Expect = 4e-21 Identities = 323/493 (66%), Gaps = 2/493 (0%) Strand=Plus/Plus Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 || || ||| |||||| ||||| | || ||| | ||||| ||| ||||| || Sbjct 151694 AATCCTGGAGCTTCATTGGGACAAAATAAACTCCACTTTTCATCTCTTTCTACTCGCTTC 151753 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 ||||| | ||| || | ||| | | | ||||||||| | | || ||||| || Sbjct 151754 ATAAACAAATCGGGAACCCATAAACCATAAAATAAATCTCGTGCTCGATTCTCTTCCTTT 151813 Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 ||| |||| || | | || | ||| || | || |||||||| || || ||||| Sbjct 151814 CCATGATTCTTTCTCAAATCTAAAAACTCAAAATGGTCGGCATGCCAAGGCTCCAAATAA 151873 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | ||| || || ||||||||||| | |||||| ||||||| ||| Sbjct 151874 ATAGCAAAAGCTCCTTTTCTCTTTCCTCCTCCTTGATCGACATATCTCGCAGTATCATTA 151933 Query 48393 TAAACTCTTAACATTGGG-ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACT 48451 | |||| | ||| ||| ||||| ||||| || | |||||||| || |||||| Sbjct 151934 AATACTCGAAGCATAGGGAACAATGCCATTGGAAGTTCCATTGGTACCTCGAATATACGA 151993 Query 48452 TCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAG 48511 | |||||| || | || || | || ||||| || || ||||||| || | Sbjct 151994 TTTGGTAGCTCGAATGTCGTGAACTGCCAATCCAATACCGCCAGCACTTTTAGAAATCAC 152053 Query 48512 AGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAG 48571 |||||| | || | ||||||||||| ||||| ||| || || ||||| | | | Sbjct 152054 AGCACAGCTCTTCAAAGTATCATAAATGCCTTCAATAGAGTCTTCCGTCATAGTGAGCAA 152113 Query 48572 AAAACAACTAGACATTTGCGGATGACAAGTTCCTG-AATTAAATAATGTTGGAGATGCAT 48630 |||||| ||| | || || || || || | | || || || || || || |||| Sbjct 152114 GAAACAAGAAGATAACTGAGGTCGAGGTGTACCGGCATTTGAACAAAGTGGGCGAAGCAT 152173 Query 48631 GAATAAACCATTT 48643 | |||| |||| Sbjct 152174 GCGTAAAATATTT 152186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562107977915880