Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq72 190 2e-43 seq89 176 5e-39 seq82 176 5e-39 seq66 170 2e-37 >seq72 Length=85273 Score = 190 bits (210), Expect = 2e-43 Identities = 367/533 (69%), Gaps = 9/533 (2%) Strand=Plus/Plus Query 37168 ACAATAAACATGCAAAAT-CACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 |||| ||||||||||||| | ||||| ||||| ||||| || |||| || || ||| Sbjct 75618 ACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAA 75677 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || || || |||||||| | |||||| ||||| | ||||||||| | ||| || || Sbjct 75678 AATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAGGAACCC 75737 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 || || || || ||||| || || ||||| ||||| |||||| | | || | | | | Sbjct 75738 GAGAAAAATATTCCTTCTACCGCAGCAAAAGCTACCAGACGTTCAGCAAACGAAGCAGAA 75797 Query 37347 TAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTT-AACACATTCAATTGTTTC 37405 | ||| |||||||| | ||| | || |||| | | || ||| |||| ||| Sbjct 75798 GACTCA---ATCCATTTCAGAGCCCATT-TGGCTTTCTTCTCAATACACGGAATTCGTTC 75853 Query 37406 AATTGCTTTTAAGAGAAAGttt-ttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 ||||||| ||| || | ||||| | | |||| ||||||| || || || |||| Sbjct 75854 CATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 75913 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 | |||| |||| || || |||||||| || ||||||||||| ||||| ||||| | | Sbjct 75914 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 75973 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||||| | ||||||||| | ||| || | || | || || ||| || |||| Sbjct 75974 CTTCAGGAATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 76032 Query 37585 CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATT 37644 | | |||||||| || | |||| ||||| || | |||||| | || | Sbjct 76033 CTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAACT 76092 Query 37645 TTTTCCAATCATTAATATCTTTTGATAAATC-AACTTCATCAACGGTCCAAAA 37696 |||||||||| | | ||| ||| || || | ||| ||| | |||||||| Sbjct 76093 TTTTCCAATCTTCCAAATCACCTGACAAGTCGGATTTCTTCAGCAGTCCAAAA 76145 >seq89 Length=114172 Score = 176 bits (194), Expect = 5e-39 Identities = 410/609 (67%), Gaps = 27/609 (4%) Strand=Plus/Plus Query 37165 TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAG 37224 || |||| | || ||||| |||||||| || |||||||||| |||||| ||||| | Sbjct 96955 TATACAAAAGGCAAGCAAATTCACAATGCAAGCCTTCATCTCGTGATATCAACTCATTGG 97014 Query 37225 AAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATC 37284 ||||||| | ||| ||||| || || | ||| || | ||||||||| | ||||||| | Sbjct 97015 AAAAGGTCAGTCCAGGCATCAACCCCCGTTTCTTCAACCAAAATATGGAA-CAAAAGAAC 97073 Query 37285 CAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 |||||||||| || ||||| || |||||||| || || |||| | | | || ||| Sbjct 97074 CAGAAAAGAATATCCCTTCGACCGCTGCAAAAGCAACCAGAC--GCTCGGCAA----AAC 97127 Query 37345 TATAATCAGA----AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 ||| | | | ||||||||| | |||||| ||| || ||| || || || Sbjct 97128 TATGAGAACACTCGAATCCATTTCAACGACCAATCCGCC-TTCTTTTCACGCAGGGAAGG 97186 Query 37401 GTTTCAATTGCTTTTAAGA---GAAAGtttttttCTTCACTATCTGTTATATAAGTATCA 37457 ||||||| || || | || |||| ||| ||| ||| ||||| || || Sbjct 97187 TTTTCAATGGCAAAGAACAGTCGACGCTTTTCTTCGACAC-CTCTCGAATATACGTGTCT 97245 Query 37458 ATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAA 37517 || || || ||||||||| ||||| | |||||| || || | ||||| ||||||||| Sbjct 97246 ATCAGCAACGCATACATTTCCGAGTGTACATTTTCCATCGCCAGTTGAAAGCCATAAAAA 97305 Query 37518 CACCTAGCTTCAGATAATTGAACATCG----TTAAAAAACCTCTTAGCTAAGTTTTCATT 37573 || | ||||| | | ||| || ||| | ||| | || || ||||||||||| Sbjct 97306 CAACGCGCTTCGGGGACTTGTACTTCGGTGCTGAAACGAGCT----GCCAAGTTTTCATT 97361 Query 37574 AACTATCCCAT--CACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCA 37631 || || |||| | ||| ||||||||||| | ||| | ||| || || ||| Sbjct 97362 CACGATGCCATACCCGAAGCAGCAAAGAAAGCCAAAACGTGGGATATGAAGTGCTGTTCT 97421 Query 37632 TCA-TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGT 37690 | ||| || |||||| | |||| || || || ||||| || || || Sbjct 97422 GAAGCCTGAAGCGAATTCCCAATCCCGCAAGTCTTGAGACAAGTCGACTTCTTCGACTGT 97481 Query 37691 CCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAA 37750 ||| ||||| || ||||||||| |||| ||| || | ||| | ||| ||||| Sbjct 97482 CCAGAAACTAGCTTCTGCACGTTTGTACAATTCCCAGATTTGTCTATATCTTATAGGAAA 97541 Query 37751 TATTACAAA 37759 || ||||| Sbjct 97542 TAGAACAAA 97550 >seq82 Length=95658 Score = 176 bits (194), Expect = 5e-39 Identities = 367/535 (69%), Gaps = 15/535 (3%) Strand=Plus/Minus Query 37168 ACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAA 37227 |||| ||||||||||| || ||||| ||||| ||||| || |||| || || |||| Sbjct 94757 ACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGTTGGAAA 94698 Query 37228 AGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG--ATCC 37285 | || || |||||||| | ||||||||| | ||||||||| | |||||| |||| Sbjct 94697 ATGTCAAGCCTGGCATGAGACCTCTTTTC---AACCAAAATATGGAA-CAAAAGGAATCC 94642 Query 37286 AGAAAAGAAAATACCTTC-AACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC 37344 || || || || ||||| ||| || ||||||||||| |||||| | | || | | | Sbjct 94641 CGAGAAAAATATTCCTTCTAACCGCAGCAAATGCTACCAGACGTTCAGCAAACGAAGCAG 94582 Query 37345 TATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTT-AACACATTCAATTGTT 37403 | | ||| |||||||| | ||| | || |||| | | || ||| |||| | Sbjct 94581 AAGACTCA---ATCCATTTCAGAGCCCATT-TGGCTTTCTTCTCAATACACGGAATTCGT 94526 Query 37404 TCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGT 37463 || ||||||| || | | ||||| | | |||| ||||||| || || || ||| Sbjct 94525 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 94466 Query 37464 AAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTA 37523 | | |||| |||| || || |||||||| || ||||||||||| ||||| ||||| | Sbjct 94465 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 94406 Query 37524 GCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTA-AGTTTTCATTAACTATCCC 37582 ||||||| | ||||||||| | ||| || | || | | | | | ||| || || Sbjct 94405 GCTTCAGGAATTTGAACATC-CCGACAAATCTTTCTGCAAGATTCTCCCAAAACGATACC 94347 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAA 37642 ||| | |||||||| || | |||| ||||| || | |||||| | || Sbjct 94346 ATCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCAA 94287 Query 37643 TTTTTTCCAATCATTAATATC-TTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 ||||||||||| | | ||| ||| || || | ||| ||| | |||||||| Sbjct 94286 CTTTTTCCAATCTTCCAAATCAGCCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 94232 >seq66 Length=178311 Score = 170 bits (188), Expect = 2e-37 Identities = 367/536 (68%), Gaps = 16/536 (3%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCT--ACTTATCAATT--CATTAGAAAA 37228 |||||||||||||| ||||| ||||| ||||| || || | || | || ||||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAA 8328 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAG 37287 || || |||||||| | |||||| ||||| | ||||||||| |||||| | || | Sbjct 8327 TGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCG 8268 Query 37288 AAAAGAAAATACC-TTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA 37346 | || || || || |||||| || ||||| ||||| |||||| | | || | | | | Sbjct 8267 AGAAAAATATTCCCTTCAACCGCAGCAAA-GCTACCAGACGTTCAGCAAACGAAGCAGAA 8209 Query 37347 TAATCAGAAATCCAtttttttGT-CCAATCTGCCTTTAATTT-AACACATTCAATTGTTT 37404 | ||| |||||||| | | || || || |||| | | || ||| |||| || Sbjct 8208 GACTCA---ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGTT 8152 Query 37405 CAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTA 37464 | ||||||| || | | ||||| | | |||| ||||||| || || || |||| Sbjct 8151 CCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGTA 8092 Query 37465 AACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG 37524 | |||| |||| || || |||||||| || ||||||||||| ||||| ||||| | | Sbjct 8091 GAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGTG 8032 Query 37525 CTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCAT 37584 |||||| | ||||||||| | |||| || | || | || || ||| || |||| Sbjct 8031 CTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCAT 7972 Query 37585 -CACT--AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA 37641 | || | |||||||| || | |||| ||||| || | |||||| | | Sbjct 7971 ACTCTGAGGAAGCAAAGAATGCCAATACATGAGAGATAAAGTGGCGTTCATCTGCAGTCA 7912 Query 37642 A-TTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||||||||| || | | ||| ||| || || | ||| ||| | |||||||| Sbjct 7911 ACTTTTTTCCAGTCTTCCAAATCACCTGACAAGTCGATTTCTTCAGCAGTCCAAAA 7856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592315933736680