Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq36 136 3e-27 seq58 132 4e-26 seq77 131 1e-25 seq103 109 4e-19 >seq36 Length=139094 Score = 136 bits (150), Expect = 3e-27 Identities = 175/236 (74%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || || ||||| || || || ||||||||||| || ||||| ||||| || || | Sbjct 92194 TTCCACC-CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTG 92252 Query 101301 CGATAGTTCTGGCATCGTCCAA-TTGCTTACCTGCAAATATC-AAACGCTGTTGATCGGG 101358 | ||| | |||| || || |||||| || ||||||||| ||||| || || || || Sbjct 92253 AAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTGG 92312 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT-TCTACAGTGTCAGACGTTT 101417 ||||| ||||| || ||||| || || || ||| || || | ||| || || | | Sbjct 92313 AGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGCT 92372 Query 101418 CCACTTCAAGAGT----GACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||||| | ||| |||||||| | || ||||||||||||||||| Sbjct 92373 CCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCAT 92428 Score = 109 bits (120), Expect = 4e-19 Identities = 171/239 (72%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG-- 101300 || || || | ||| || || || ||||||||||| || ||||| ||||| || || | Sbjct 91780 CCACCCCTCAGACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCTGGA 91839 Query 101301 -----CGA-TAGTTCTGGCAT-CGTCCAATTGCTTACCTGCAAATATC-AAACGCTGTTG 101352 ||| || ||| | || ||| |||||| || ||||||||| ||||| || || Sbjct 91840 AATCACGACTAAAGCTGATTTCCGACCAGTTGCTTTCCAGCAAATATCAAAACGTTGCTG 91899 Query 101353 ATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG-TTTTACAATTTCTACAGTGTCAG 101411 || || || || ||||| |||||||| || || | || || | || | |||||| | Sbjct 91900 GTCTGGAGGGATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCAATAGTGTCTG 91959 Query 101412 ACGTTTCCACTTCAAGAGTG-ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | | ||||||||||||||| | || ||||| || | || || |||||||||||||| Sbjct 91960 AAGGCTCCACTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAATATCTGCAT 92018 >seq58 Length=124683 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 5/203 (2%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA-----T 101315 || || || | ||||||||| ||||||||||| || || | | |||||| | | Sbjct 62592 ACCAAGTGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGCT 62651 Query 101316 CGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTAT 101375 | ||||||||||| ||||||||||||||||||||||||||||| ||||| || || || | Sbjct 62652 CTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTGT 62711 Query 101376 CTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCG 101435 |||| ||||| ||||| |||| | |||||| || | || ||||| | ||| | | Sbjct 62712 CTTGTATTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATGG 62771 Query 101436 TTTTGCCGGTTAAAGTTTTTACA 101458 | ||||| || | || | |||| Sbjct 62772 TCTTGCCAGTAAGTGTCTATACA 62794 >seq77 Length=161124 Score = 131 bits (144), Expect = 1e-25 Identities = 172/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTA-TATTGTAATCG 101299 |||| || |||| |||||| || || || || ||||| || ||||| | | ||||| || Sbjct 114519 TTCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTCT 114578 Query 101300 GCGATAGTTCTGGCAT--CGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGG 101357 ||| ||| | ||| | ||||| || ||||||||||| |||||||| || || || | Sbjct 114579 -CGAGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCTG 114637 Query 101358 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT--ACAGTGTCAGACGT 101415 | ||||| ||||| || ||||| || || || ||| |||| | ||| || || | Sbjct 114638 GGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGGG 114697 Query 101416 TTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||||| | || || || || | ||| ||||| ||||||||||| Sbjct 114698 CTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114751 Score = 116 bits (128), Expect = 3e-21 Identities = 172/237 (73%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTA--TATTGTAATC 101298 |||| || || | |||||| || || ||||| ||||| || ||| | | | ||||| || Sbjct 113825 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTT-GAAGCTGTTGTAGTC 113883 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACC----TGCAAATATCAAACGCTGTTGAT 101354 | || ||| | |||| ||||| || || || |||||| |||||||| || || | Sbjct 113884 TGAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAA-ATCAAACGTTGCTGGT 113942 Query 101355 CGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACG 101414 | || ||||| ||||| || ||||| || || || ||| ||| | |||||| || | Sbjct 113943 CTGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGG 114002 Query 101415 TTTCCACTTCAAGAG-TGAC-CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||||||||||| |||| || || || || | ||| ||||| ||||||||||| Sbjct 114003 GCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114059 Score = 109 bits (120), Expect = 4e-19 Identities = 169/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTA--TATTGTAATC 101298 |||| || || | |||||| || || ||||| ||||| || ||||| | | ||||| || Sbjct 114289 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTTGAAGCTGTTGTAGTC 114348 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGG 101358 ||| ||| | ||| ||||| || || || ||||| |||||||| ||||| || || Sbjct 114349 T-CGAGAGTACGACCATGCTCCAACTGTTTCCCAGCAAA-ATCAAACGTTGTTGGTCTGG 114406 Query 101359 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCT--ACAGTGTCAGACGTT 101416 ||||| ||||| || ||||| || || | ||| | ||| | | |||||| || | Sbjct 114407 GGGAATACCTTCCTTGTCTTGTATCTTC-GACTTAAAGTTTTTCAATAGTGTCTGAGGGC 114465 Query 101417 TCCACTTCAAGAGT-GACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||||| | || || || || | ||| || || ||||| ||||| Sbjct 114466 TCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTCACGAATATTTGCAT 114519 Score = 105 bits (116), Expect = 5e-18 Identities = 172/240 (72%), Gaps = 16/240 (7%) Strand=Plus/Plus Query 101243 CCTCCTCTT-AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 || |||||| ||||| || || || ||||| ||||| || ||||| || ||||| || | Sbjct 113589 CCACCTCTTCAAACGCAACACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCTGA 113648 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACC----TGCAAATATCAAACGCTGTTGATCGG 101357 || ||| | |||| ||||| || |||| |||||| |||||||| || || || | Sbjct 113649 GAGAGTGCGACCATCTTCCAACTGTTTACTCCCATGCAAA-ATCAAACGTTGCTGGTCTG 113707 Query 101358 GCGGAATGCCTTCTTTATCTTGAATTTTTTGT--TTTACAATTT----CTACAGTGTCAG 101411 | ||||| ||||| || ||||| || | || || ||| || ||| | | | || Sbjct 113708 GGGGAATACCTTCCTTGTCTTGTATATCTTCGACTTGACAGTTCGGAACTATATTCTGAG 113767 Query 101412 ACGTTTCCACTTCAAGAG-TGACCGTT-TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||||||||||| |||| | | || || || | ||| ||||| ||||||||||| Sbjct 113768 --GGCTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 113825 Score = 104 bits (114), Expect = 2e-17 Identities = 170/235 (72%), Gaps = 10/235 (4%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTA--TATTGTAATC 101298 |||| || || | |||||| || || ||||| ||||| || ||| | | | ||||| || Sbjct 114059 TTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTT-GAAGCTGTTGTAGTC 114117 Query 101299 GGCGATAGTTCTGGCATCGTCCAATTGCTTAC-CTGCAAATATCAAACGCTGTTGATCGG 101357 ||| ||| | |||| ||||| || |||| ||||||| |||||||| || || || | Sbjct 114118 T-CGAGAGTACGACCATCTTCCAACTGTTTACGCTGCAAA-ATCAAACGTTGCTGGTCTG 114175 Query 101358 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAG--TGTCAGACGT 101415 | ||||| ||||| || ||||| ||| || |||| | || || |||| || | Sbjct 114176 GGGGAATACCTTCCTTGTCTTGTATTGGGACTTG-ACAAGTCCTCCAAGCTGTCTGAGGG 114234 Query 101416 TTCCACTTCAAGAGTGACCGTT-TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||||||| | | | || || || | ||| ||||| ||||||||||| Sbjct 114235 CTCCACTTCAAGAGTAAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCAT 114289 >seq103 Length=203287 Score = 109 bits (120), Expect = 4e-19 Identities = 168/238 (71%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| ||||| | || || || || | || ||||| ||||| ||||| || || | Sbjct 14160 CCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCCGAC 14219 Query 101303 ATAGTTCTGGCATCGTCCAATTGC--TTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | |||||| | || || | |||| || || |||||||| | | |||||||| || | Sbjct 14220 AGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAGGGG 14279 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTG-TTTTACAATTTCTACAGTGTCAGACGTTTCC 101419 | || |||||||||||||||| | |||| ||| ||| |||||| ||| || || | ||| Sbjct 14280 GTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGTTCG 14339 Query 101420 ACTTCAAGAGTGA-------CCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || | || | || || || || || ||||| |||||||| |||||| Sbjct 14340 ACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCATG 14397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277834931769