Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq17 425 6e-114 >seq17 Length=139726 Score = 425 bits (470), Expect = 6e-114 Identities = 722/1021 (71%), Gaps = 29/1021 (3%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTG-TGGGGTGGTCTGGATT--ACTACTT 164675 ||||| ||||| ||||| ||||||||||| ||| | || ||||| || || | ||||| Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 164676 CTTCCCACTGCTTAT---CTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACG 164732 |||| | | || || ||| | |||| |||| |||| || ||| |||| || || Sbjct 27303 -TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTT-GTTACT 27360 Query 164733 AGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCA 164792 |||||| || |||||| | |||||||| ||| | ||||| ||| ||| | || || Sbjct 27361 TCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGCT 27419 Query 164793 GCTGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCTG 164850 || || || | ||||| || |||||| || ||| | | ||| ||| |||| || | Sbjct 27420 GCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCAG 27476 Query 164851 AGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTC 164910 | |||| || |||| | ||||| ||| |||| || |||||| || ||| Sbjct 27477 AAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTT 27536 Query 164911 TCCACGGTGCCTTCGCCCT-AATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTC 164969 | || ||||| || | | ||| ||||| | | || || ||||| | ||| | | Sbjct 27537 TACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTCAATTTGAAATAGCAAGATTA 27595 Query 164970 ATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT-TGTCAG 165028 | || || | || || ||||| || || || || || || ||||| ||||| | |||| Sbjct 27596 GTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTTGTTTCAG 27655 Query 165029 CGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGT 165088 | || ||||| || ||||| || || | |||||||||| ||||| ||||| || Sbjct 27656 --TATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGAGT 27711 Query 165089 GGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCC 165148 ||||| ||||||||||| | || || | ||||| ||||| |||||||| | || || Sbjct 27712 TGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATCC 27770 Query 165149 CTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGG 165208 |||||||||||||||||||| || || | || |||||||| | | ||||||||||| Sbjct 27771 ATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATGG 27830 Query 165209 AGTCACAGTTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTT 165268 || || || |||||||| |||| || ||||| || || ||||| || | || || Sbjct 27831 AGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTTT 27890 Query 165269 TGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCA 165328 | | ||||| |||||| |||||||| ||||| || || || || || ||||| || Sbjct 27891 TACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACA 27949 Query 165329 GATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATT--TTTTCATGTTGTTTGTG 165386 || || || |||| |||||||| || | ||||| |||| ||| ||| | |||||| Sbjct 27950 AAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTG 28007 Query 165387 CCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGT 165446 || |||| || | |||||| |||||||| ||||| || ||||| | || | ||| Sbjct 28008 CCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGT 28067 Query 165447 GCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTC 165506 || || |||||||| ||| || | | || ||||| |||||||||||||| ||||| Sbjct 28068 GCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTT 28127 Query 165507 TACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGA-TCA 165565 || || ||||| | || | |||||||| || | || ||| ||||| | || ||| Sbjct 28128 TATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCA 28187 Query 165566 ACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATA 165625 ||| |||||||| ||| | |||||||| || || || || | || || ||||||||||| Sbjct 28188 ACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAATA 28246 Query 165626 A 165626 | Sbjct 28247 A 28247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563208776305960