Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq17 428 5e-115 >seq17 Length=139726 Score = 428 bits (474), Expect = 5e-115 Identities = 726/1025 (71%), Gaps = 29/1025 (3%) Strand=Plus/Plus Query 9825 TTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTG-TGGGTTGGTCTGGACT-ACTTCT 9882 ||||||| ||||| ||||| ||||||||||| ||| | || ||||| || | | || Sbjct 27241 TTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTAC 27300 Query 9883 TTTTCCCACTGCTTAT---CTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCAC 9939 |||||| | | || || || | || | ||| |||| || || || ||||| || Sbjct 27301 TTTTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAAC-TTTGTTAC 27359 Query 9940 GAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGC 9999 |||||| ||||| || | || | ||| | || || |||||| | || || Sbjct 27360 TTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGC 27418 Query 10000 GGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCT 10057 || || |||| ||||| || |||||| || ||| | | ||| ||| |||| || Sbjct 27419 TGCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCA 27475 Query 10058 GAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCG 10117 || |||| || ||||| | ||| || |||| || | ||| | ||| || Sbjct 27476 GAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCT 27535 Query 10118 CTCCACGGAGCCTTCGCT-TTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATT 10176 | || || || || | ||||| || ||| | ||||| || ||||| | || ||||| Sbjct 27536 TTACATGGTGCTTTTGGAATTAATAGGTTTTGT-TTACGTCAATTTGAAATAGCAAGATT 27594 Query 10177 AATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTT-TGTCA 10235 | | ||||| |||| || ||||| || || ||||| || || ||||| ||||| | ||| Sbjct 27595 AGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTTGTTTCA 27654 Query 10236 GTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCG 10295 || ||| || || |||||||| ||||| |||||||||| |||| || ||||| || | Sbjct 27655 GTATTT--CTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCCTAGTTTTGGAG 27710 Query 10296 TCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATC 10355 | || || || || | || || | || | || ||||| ||||| ||||| | |||| Sbjct 27711 TTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATC 27769 Query 10356 CCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACG 10415 | |||||||||||||| |||||||| ||||| || || || | | | || || || | Sbjct 27770 CATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATG 27829 Query 10416 GAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTT 10475 ||| ||||||||||| || | | | ||||||||||| || || ||||||| ||||| Sbjct 27830 GAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTT 27889 Query 10476 TTGATAGC-ACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 || | | | || ||| |||||| || ||||| |||||||| ||||| ||||| ||||| Sbjct 27890 TT-ACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCGTTT-TGGTCA 27947 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTT--ATGCTGTTTG 10592 || || ||||| |||||||| |||||| | ||||| ||||||||| ||||| |||| Sbjct 27948 CAAAT-TTTGGTGTTGCTTTT-CTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTG 28005 Query 10593 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 10652 | || |||| || | ||||| ||||||||| || || || ||||| | ||| | | Sbjct 28006 TGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTAC 28065 Query 10653 GTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGT 10712 |||| || ||||| || |||||||| | | || |||| ||||| |||||||| || | Sbjct 28066 GTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCT 28125 Query 10713 TCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGA-C 10771 | ||||| || ||| | || || || |||||| | | |||||||||||| || || Sbjct 28126 TTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATT 28185 Query 10772 CAACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCCTAGAGGTAATGCACTGTGA 10831 |||||||| |||| ||||| |||||||| || ||| | || | || ||||| || | | Sbjct 28186 CAACCACATGAAA-ATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAA 28244 Query 10832 TATTC 10836 || || Sbjct 28245 TAATC 28249 Score = 86.0 bits (94), Expect = 6e-12 Identities = 67/79 (85%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 15398 ATATCGGGAATTAGCGCAGTTTGGTA-GCGCGCCTGCTTTGGGAGCAGGATGCCACAGGT 15456 || |||||| ||||| ||||||||| ||||| ||||||||||||||| ||| | ||||| Sbjct 132070 ATCTCGGGATGTAGCGTAGTTTGGTAAGCGCGTCTGCTTTGGGAGCAGAATGTCGCAGGT 132011 Query 15457 TCAAATCCTGTATTCCCGA 15475 |||||||||| |||||| Sbjct 132010 TCAAATCCTGCCATCCCGA 131992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516479244648000