Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq17 434 1e-116 >seq17 Length=139726 Score = 434 bits (480), Expect = 1e-116 Identities = 725/1025 (71%), Gaps = 35/1025 (3%) Strand=Plus/Plus Query 162127 TTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTG-TTGGCTGGTCTGG--------AC 162177 |||| || ||||| ||| | || || || || ||| |||| ||||| || || Sbjct 27241 TTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTAC 27300 Query 162178 TTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCG 162237 || | ||| |||| | | || || || || | |||| |||| || || ||||| | Sbjct 27301 TTTTCCTTGTTCCTAAACCCTA----GCCCTAGGCGCTTGGTTTACAGGTACAACTTT-G 27355 Query 162238 TCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACTTTCTT 162296 | || |||||||||||| || | || ||| ||| | || || || || ||| | Sbjct 27356 TTACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAA--TTTTTA 27413 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 ||||| ||||| || | || ||| | |||||| || || | || || ||||||| Sbjct 27414 ACTGCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TATGGGGA 27472 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 || || ||||||| || || | | ||||| ||| |||| || | ||||| ||| Sbjct 27473 CCAGAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACA 27532 Query 162417 GCGCTCCACGGAGCCTTTGCACTTA-TAGGTTTCATGCTT-CGCCAGTTTGAACTGGCAC 162474 || | || || || |||| | ||| ||||||| || || || || |||||| | ||| Sbjct 27533 GCTTTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAATAGCAA 27590 Query 162475 GACTTATCGGTATTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCG 162534 || | | || ||| | || || ||||| || ||||| || || || ||||| || || | Sbjct 27591 GATTAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTT-G 27649 Query 162535 TTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCG 162594 || || |||||||| ||||| | |||||| | ||||| | | | || || | Sbjct 27650 TTTCAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTTGCTCCTAGT--TTTG 27707 Query 162595 GGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAA 162654 | || ||||| ||||| |||| | | || | ||||| |||||||||||||| ||| Sbjct 27708 GAGTTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAA 27766 Query 162655 ATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTC 162714 |||| || || |||||||| || || || || |||||||| ||||| | | ||||||| Sbjct 27767 ATCCATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTC 27826 Query 162715 ATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAG 162774 |||||| || || |||||||| | | |||||||||||| || || ||||| | || Sbjct 27827 ATGGAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAG 27886 Query 162775 CATTTGACTCC-ACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGG 162833 | ||| || || ||||| |||||||| ||||| |||||||| || || || || ||| Sbjct 27887 C-TTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGG 27944 Query 162834 TCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTT--ATGCTCT 162891 ||||| ||||| ||| |||||||| ||| || | ||| | ||||||||| ||||| | Sbjct 27945 TCACAAATTTT-GGTGTTGCTTTT-CTAATAAAAGATGGCTACATTTCTTTGAATGCTAT 28002 Query 162892 TTGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATC 162951 |||| || || | || | |||||||||||||| |||||||| ||||| || | ||| Sbjct 28003 TTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATT 28062 Query 162952 TTCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGA 163011 | ||||| || || || || ||||||||| | ||||| ||||| || || || ||||| | Sbjct 28063 TACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAA 28122 Query 163012 CGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGG 163071 | || ||||| || || | || || |||||||| | |||||||| | ||| || | Sbjct 28123 CCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAG 28182 Query 163072 A-CCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCTA 163130 | ||||| ||||| || ||||| ||||| || ||||| || ||| | || || || || Sbjct 28183 ATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTT 28241 Query 163131 TGATA 163135 | ||| Sbjct 28242 TAATA 28246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547746398919720