Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq17 464 8e-126 >seq17 Length=139726 Score = 464 bits (514), Expect = 8e-126 Identities = 730/1020 (72%), Gaps = 29/1020 (3%) Strand=Plus/Minus Query 101704 TATCACAGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGT 101763 ||| | || || || || | ||| || ||||| || || |||||||| |||||||| ||| Sbjct 28246 TATTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAA-TTTTCATGTGGT 28188 Query 101764 TGA-TCGACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTA 101822 ||| || || ||||| |||||| | || ||||||||| | || | || || || || Sbjct 28187 TGAATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGGAGTAAATTTTTAGTATA 28128 Query 101823 GAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGC 101882 || || || || |||||||| ||||| || | | ||||| || || || ||||| || Sbjct 28127 AAAGGTTTCAAATTCTGGATCCTCTGCGGCACGTAATTCTTGAGAAACGAAATCATATGC 28068 Query 101883 ACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGG 101942 ||| | || | ||||| || |||||||| || ||||||||||| | || |||| || Sbjct 28067 ACGTAAATTTAATGCAAGTCCTATAATACCAATAGAACTTGTCCATAATCCAGTAACTGG 28008 Query 101943 AACAAAGAGCAT--AAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATT 102000 ||||| ||||| ||||||||| | ||| || |||||| ||| |||| |||||| ||| Sbjct 28007 CACAAATAGCATTCAAAGAAATGTAGCCATCTTTTATTAGAAAA-GCAACACCAAA-ATT 27950 Query 102001 TGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCG 102060 || ||||| ||||| || |||||||||||||||||||| ||||| |||||| | Sbjct 27949 TGTGACCA-AAACGATTAGCTGTAACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTA 27891 Query 102061 AATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACA 102120 || ||| ||||||| || || || ||||||||| | | || || || ||||| | Sbjct 27890 AAAGCTCTGAAAGTATTAGCAGCTTCGCCATCTTCAAATAAGGTATTTTCTACAGTTGCT 27831 Query 102121 CCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAAT 102180 || || || || ||| | |||||| || || || || ||||||||||||||||||||| Sbjct 27830 CCATGAATAGCGCACAATAATGCTCCACCAAGTATTCCAGCAACACCCATCATATGGAAT 27771 Query 102181 GGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCA 102240 || || | ||||||||||||||||| || | || | | |||||||| || |||||| Sbjct 27770 GGATTTAAAGTCCAGTTATGGAAGCCTTGCA-AAATAAAATAAATCTAAAGATAGCTGCA 27712 Query 102241 ACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACA 102300 || ||||| || |||| |||||||| | ||||| || ||||| || |||| | | Sbjct 27711 ACTCCAAAACTAGGAGCAA--AACCAACTAGCTTGTCCAAGTGGATAAATAAGAA--ATA 27656 Query 102301 CTGACA-AAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAAT 102359 |||| | ||||| || || || || || || || || ||||| || || | |||||| | Sbjct 27655 CTGAAACAAAACTGCAATTGGTCCCGAAAAAGCTATTGCATTATATGGTCTAATTCCTAC 27596 Query 102360 TAACCTAGCCAACTCGAATTGACG-AAGCATGAAACC-AATGAGGGCAAATGCACCGTGG 102417 ||| || || | || |||||||| || || ||||| | | | |||| ||||| || Sbjct 27595 TAATCTTGCTATTTCAAATTGACGTAAACA--AAACCTATTAATTCCAAAAGCACCATGT 27538 Query 102418 AGAGCCACAAAAGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCT 102477 | ||| ||| | ||| | || |||| ||| ||| || ||||| ||||||||| Sbjct 27537 AAAGCTGTAAATGTCCATAAACCTCCAATTTGACACCATCTAGTAAAATCACCTTGAGCT 27478 Query 102478 TCAGGACCCC--AAAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAG 102535 || || |||| ||| ||| | | ||| || |||||| | ||||| |||| || | Sbjct 27477 TCTGGTCCCCATAAAATAGTA-ATGAG--TGTCCCATACTATTTGCAGGGCTTGATACTG 27421 Query 102536 CAGCTGTAAGGAAATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGG 102595 |||| || | |||||| ||||| | ||| ||| || | || || |||||||| | Sbjct 27420 CAGCAGTTA-AAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGAGTATACCAAG 27362 Query 102596 AAGTAGCAAACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAG---ATAAGCAGTGGGAA 102652 ||||| |||| || || || |||| ||| | || | || || || | | |||| Sbjct 27361 AAGTAACAAA-GTTGTACCTGTAAACCAAGCGCCTAGGGCTAGGGTTTAGGAACAAGGAA 27303 Query 102653 AAAGAAGT-AGTCCAGACCAACCCA-CAAAGACAAAGCGATCTCGTTTAATCCAGTCATC 102710 || || | | || ||||| || | ||| ||||||||||| ||||| | ||| ||||| Sbjct 27302 AAGTAATTCAAACCTGACCATCCAATTAAATACAAAGCGATCACGTTTTAGCCAATCATC 27243 Score = 116 bits (128), Expect = 5e-21 Identities = 170/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 102775 TTAGTAGAGTGATTCTTCTTGTTCTGTCAGGACTACCACATCCGAAGTTGGGTATGCCAC 102834 |||||| | |||||||||||| | || | | | ||| ||||| || ||||| || Sbjct 57144 TTAGTATAATGATTCTTCTTGATGAGTTAAAATTGTTGCATTAGAAGTAGGATATGCAAC 57085 Query 102835 GCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCTTG 102894 ||||| || ||||| ||||||| || |||||| ||||| | |||||| ||||| ||| Sbjct 57084 ACAGGTTAGTACAAATCCTGCTTTTACTTGATCATCATCTA-AAAGGACTGATCAGATTG 57026 Query 102895 ATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGC--ACCAGCACGACAG 102952 |||||| || | | || || || ||||||||||| || || || | ||| Sbjct 57025 ATCTACTTCTCCTTCTAAGAGTTTGCCTGCGCAAGTAGAACATGCTTCCCTGCTCTACAA 56966 Query 102953 GAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA-TCATC 103008 ||||| || ||||| | ||| ||| ||||| || |||| ||||||||| ||||| Sbjct 56965 GAATAGGGGAGATCTAATCCTTGTTCTTCAGCTGCATCTAATATATATTGATTCATC 56909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633512673486360