Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq74 192 3e-44 >seq74 Length=163707 Score = 192 bits (212), Expect = 3e-44 Identities = 336/480 (70%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 25888 ATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGG 25947 ||| ||||| |||||| ||| | ||| | || ||| || |||||| ||||| || Sbjct 151708 ATTGGGACAAAATAAACTCCACTTTTCATCTCTTTCTACTCGCTTCATAAACAAATCGGG 151767 Query 25948 AATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTT 26007 || ||| | ||||||||||||||| |||| | ||||| ||||| ||||||||| | Sbjct 151768 AACCCATAAACCATAAAATAAATCTCGTGCTCGATTCTCTTCCTTTCCATGATTCTTTCT 151827 Query 26008 TAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACC 26067 | |||||| || |||||| || | ||||| || || ||||| ||||||||| || Sbjct 151828 CAAATCTAAAAACTCAAAATGGTCGGCATGCCAAGGCTCCAAATAAATAGCAAAAGCTCC 151887 Query 26068 TTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACAT 26127 |||||| |||||||| |||||||| || ||||| ||||| ||||| || ||| | ||| Sbjct 151888 TTTTCTCTTTCCTCCTCCTTGATCGACATATCTCGCAGTATCATTAAATACTCGAAGCAT 151947 Query 26128 -TGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAA 26186 ||||| | ||| | ||| ||| || || | |||| | ||| || | || || Sbjct 151948 AGGGAACAATGCCATTGGAAGTTCCATTGGTACCTCGAATATACGATTTGGTAGCTCGAA 152007 Query 26187 TATCGTGAGCATG--AATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA-ATCTG 26243 | |||||| | || ||| || || || ||||| | ||| ||||| | ||||| ||| Sbjct 152008 TGTCGTGAAC-TGCCAAT-CCAATACCGCCAGCACTTTTAGAAATCACAGCACAGCTCTT 152065 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 || ||||| |||| |||| || || | |||| | || |||||||||| Sbjct 152066 CAA-AGTATCATAAATGCCTTCAATAGAGTCTTCCGTCATAGTGAGCAAGAAACAAGAAG 152124 Query 26304 ATAATTGCGAATGAGTTGTTCCTG-AATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 |||| || | ||| ||| || | | || || || || || | |||||| ||| ||||| Sbjct 152125 ATAACTGAGGTCGAGGTGTACCGGCATTTGAACAAAGTGGGCGAAGCATGCGTAAAATAT 152184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039639180775