Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq17 401 7e-107 seq81 91.5 2e-13 >seq17 Length=139726 Score = 401 bits (444), Expect = 7e-107 Identities = 739/1063 (70%), Gaps = 54/1063 (5%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| || || || | |||||| || || |||||||||||||| || ||||| ||||| Sbjct 28244 TTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAATTT-TCATGTGGTTG 28186 Query 122926 G-TCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGA 122984 || | || |||||||||||| || |||||||| || || | || || ||||| | Sbjct 28185 AATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGGAGTAAATTTTTAGTATAAA 28126 Query 122985 AAGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTC 123044 | || || || ||||| || ||||| || | || |||||||| || || || ||||| | Sbjct 28125 AGGTTTCAAATTCTGGATCCTCTGCGGCACGTAATTCTTGAGAAACGAAATCATATGCAC 28066 Query 123045 TGAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAA 123104 | || | ||| || |||| ||||| ||||| |||||| | || | || || | Sbjct 28065 GTAAATTTAATGCAAGTCCTATAATACCAATAGAACTTGTCCATAATCCAGTAACTGGCA 28006 Query 123105 CGAACAACAT--AAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTG 123162 | || | ||| || ||| |||| ||||||| |||||||| || | |||||| || || Sbjct 28005 CAAATAGCATTCAAAGAAATGTAGCCATCTTTTATTAGAAAA-GCAACACCAAA-ATTTG 27948 Query 123163 TGACCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAA 123222 |||||| || | || ||||||| ||| ||||||||||||| ||||| || || Sbjct 27947 TGACCAAAA-CGATTAGCTGTAACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGTAAA 27889 Query 123223 TGCTCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAA 123282 ||||||||||| ||| | |||| || ||||| | || Sbjct 27888 AGCTCTGAAAGTATTAGC---------AGCTTCGCCAT------------CTTCAAATAA 27850 Query 123283 TGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGC 123342 || || | || ||||| |||||||| || || | |||||||||||| |||||||| || Sbjct 27849 GGTATTTTCTACAGTTGCTCCATGAATAGCGCACAATAATGCTCCACCAAGTATTCCAGC 27790 Query 123343 AACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGAT 123402 |||||||||||| || |||||||| || || ||| ||||| ||||| | ||||| || Sbjct 27789 AACACCCATCATATGGAATGGATTTAAAGTCCAGTTATGGAAGCCTTGCA-AAATAAAAT 27731 Query 123403 ATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAG 123462 | | | |||||| ||||| || || || || || | |||||||| || || || Sbjct 27730 AAATCTAAAGATAGCTGCAACTCCAAAACTAGGAGC--AAAACCAACTAGCTTGTCCAAG 27673 Query 123463 TGGATAGATCAGAAAGA-TGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGT 123521 |||||| || ||||| | || | || ||||| || | || || || | ||| | Sbjct 27672 TGGATAAATAAGAAATACTG--AAACAAAACTGCAATTGGTCCCGAAAAAGCTATTGCAT 27615 Query 123522 TGTAAGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTC-TGAGCATGAAACCTA-T 123579 | || |||||||| ||||| | || ||| || |||||||| | | | || ||||||| | Sbjct 27614 TATATGGTCTAATTCCTACTAATCTTGCTATTTCAAATTGACGTAAACA--AAACCTATT 27557 Query 123580 GAGTCCAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACG 123639 | |||||| | |||||||| ||| ||| |||||| |||||| | ||| |||| | Sbjct 27556 AATTCCAAAAGCACCATGTAAAGCTGTAAATGTCCATAAACCTCCAATTTGACACCATCT 27497 Query 123640 AACGAATGATCCTTGTGCTTCAGGTCCCC---AAAGGAACATGAGACTATGACCCATTGC 123696 | || ||||| ||||| ||||||| ||| ||||| || ||||| Sbjct 27496 AGTAAAATCACCTTGAGCTTCTGGTCCCCATAAAATAGTAATGAG----TGTCCCATACT 27441 Query 123697 GTCACCAGGTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGC 123756 | |||| | || ||||| || ||||| || || ||| || | ||| ||||| || Sbjct 27440 ATTTGCAGGGCTTGATACTGCAGCAGTTAA-AAATTACATCCTTCTAAATAAGAAGAAGC 27382 Query 123757 AATACCATGTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGA 123816 | |||||| |||||||| || ||||| || || || ||| |||||| | || | | Sbjct 27381 TAAACCATGAGTATACCAAGAAGTAAC-AAAGTTGTACCTGTAAACCAAGCGCCTAGGGC 27323 Query 123817 TAG---ATACGCACAAGGCAGAAGTAA--AAGACCAGACCATCCTA-TGAATACAAAACG 123870 ||| || | |||||| | |||||| | ||| |||||||| | | |||||||| || Sbjct 27322 TAGGGTTTAGGAACAAGG-AAAAGTAATTCAAACCTGACCATCCAATTAAATACAAAGCG 27264 Query 123871 ATCTCTCTTTAACCAGTCGTCAAGAACATCAAACCAACCTCTT 123913 ||| | |||| ||| || |||| | ||| || |||||||| Sbjct 27263 ATCACGTTTTAGCCAATCATCAACTAAATCGAATAAACCTCTT 27221 >seq81 Length=117899 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 139458 TCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACCTT 139517 ||| ||||||||||||| |||||||| |||||||| |||||||| |||| |||||||||| Sbjct 18465 TCTTTTGTTGCAAAGAAAGCAGCATGTGGACCTCCATATCCCATTGGAACACCAAACCTT 18524 Query 139518 TGCATACTACCTACAGCAATATC 139540 ||| | || ||||||| ||| Sbjct 18525 TGCGTGGATCCGACAGCAAAATC 18547 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/141 (74%), Gaps = 1/141 (1%) Strand=Plus/Plus Query 138187 CAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAAT 138246 ||||||| || | || |||||||| ||||| ||||||||||| |||||||||||||||| Sbjct 16868 CAATAGGTCCCATACCTGGACCTCCTCCTCCGTGTGGAATACAAAATGTCTTATGTAAAT 16927 Query 138247 TTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTA 138306 | | ||||| ||||| || ||| |||| || | ||| || |||||||| | Sbjct 16928 TCAAGTGACAAACATCCGCTCCAATATCAC-CCGTGAACAAATACCAACTTGTGCATTCA 16986 Query 138307 GATTTGCACCATCGAGATATA 138327 ||| || ||||| | |||| Sbjct 16987 TATTCGCTCCATCCGGGTATA 17007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578997553214840