Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq17 354 1e-92 >seq17 Length=139726 Score = 354 bits (392), Expect = 1e-92 Identities = 638/911 (70%), Gaps = 25/911 (3%) Strand=Plus/Minus Query 23492 ATTTTTCGTGTAGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCAC 23551 |||||| || || ||||| ||| | ||| || || ||||| | |||||| || Sbjct 28139 ATTTTTAGTATAAAAGGTTTCAAATTCTGGATCCTCTGCGGCACGTAATTCTTGAGAAAC 28080 Query 23552 AAAATCATAAGCACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAG 23611 |||||||| ||||| | ||| | ||||| || || || ||||||||| ||| | Sbjct 28079 GAAATCATATGCACGTAAATTTAATGCAAGTCCTATAATACCAATAGAACTTGTCCATAA 28020 Query 23612 ACCCATGACAGGAACAAACAACAT--AAAGAAGTGCAACCAACGCTTATTGCTAAACGCA 23669 || | || || ||||| | ||| |||||| || | ||| | ||||| ||| ||| Sbjct 28019 TCCAGTAACTGGCACAAATAGCATTCAAAGAAATGTAGCCATCTTTTATTAGAAAA-GCA 27961 Query 23670 ACCCCGAAGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCC 23729 || || || |||||||||||||| ||||| ||||||||||| ||||| || || || Sbjct 27960 ACACCAAA-ATTTGTGACCAAAA-CGATTAGCTGTAACCATTGAATAAGTTTCTTCTGAT 27903 Query 23730 TGAGTGGAATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTC 23789 || || | || ||| | ||||| || || ||| ||||||||| | | ||||| Sbjct 27902 TGTGTTGGTGTAAAAGCTCTGAAAGTATTAGCAGCTTCGCCATCTTCAAATAAGGTATTT 27843 Query 23790 TCGACAGTAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCC 23849 || ||||| ||||||||||||| | | | |||||| || ||||| |||||||| ||| Sbjct 27842 TCTACAGTTGCTCCATGAATAGCGCACAATAATGCTCCACCAAGTATTCCAGCAACACCC 27783 Query 23850 ATCATATGGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTG 23909 ||||||||||| || || | ||||||||||| ||||| || | || | || || || Sbjct 27782 ATCATATGGAATGGATTTAAAGTCCAGTTATGGAAGCCTTGCA-AAATAAAATAAATCTA 27724 Query 23910 AAAATCGCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAG 23969 || || || ||||| || ||||| || |||| |||||| | ||||| | ||||| Sbjct 27723 AAGATAGCTGCAACTCCAAAACTAGGAGCAA--AACCAACTAGCTTGTCCAAGTGGATAA 27666 Query 23970 ATGAGGAATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGA 24029 || || ||||| || || || || ||||| || || |||||||| || ||||| || || Sbjct 27665 ATAAGAAATACTGAAAC-AAAACTGCAATTGGTCCCGAAAAAGCTATTGCATTATATGGT 27607 Query 24030 CGGATTCCAATTAGACGTGCCAGTTCAAACTGACGTAACATAAAACCTA-TAAGTGCAAA 24088 | ||||| | || | ||| | |||||| |||||||| | |||||||| ||| | |||| Sbjct 27606 CTAATTCCTACTAATCTTGCTATTTCAAATTGACGTAA-ACAAAACCTATTAATTCCAAA 27548 Query 24089 GGCACCGTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTC 24148 ||||| || | ||| ||| | ||| | ||||||| ||| ||| | ||| || Sbjct 27547 AGCACCATGTAAAGCTGTAAATGTCCATAAACCTCCAATTTGACACCATCTAGTAAAATC 27488 Query 24149 CCCTTGAGACTCAGGACCCC--AAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGC 24206 ||||||| || || |||| ||| ||| | | ||| || |||||| | ||||| Sbjct 27487 ACCTTGAGCTTCTGGTCCCCATAAAATAGTA-ATGAG--TGTCCCATACTATTTGCAGGG 27431 Query 24207 GTCGAGACAGCTGCCGTAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGG 24266 | || || || || || | ||| ||| || || | ||| ||| ||| | ||||| Sbjct 27430 CTTGATACTGCAGCAGTTA-AAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGA 27372 Query 24267 GTGTACCAACTCGTAACAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAG---ATAA 24323 || |||||| ||||| |||| ||| || |||| |||| |||| | ||| || || Sbjct 27371 GTATACCAAGAAGTAAC-AAAGTTGTACCTGTAAACCAAGCGCCTAGGGCTAGGGTTTAG 27313 Query 24324 GCAGTGGGAAGAAGTA--GGAGTCCAGACCAACCCA-CAAAGACAAAGCGATCCCGTTTA 24380 | | |||| ||||| | || ||||| || | ||| ||||||||||| ||||| Sbjct 27312 GAACAAGGAA-AAGTAATTCAAACCTGACCATCCAATTAAATACAAAGCGATCACGTTTT 27254 Query 24381 ACCCAGTCGTC 24391 | ||| || || Sbjct 27253 AGCCAATCATC 27243 Score = 125 bits (138), Expect = 1e-23 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 |||||||| | |||| |||| | ||| |||||| |||||||||||||| || || ||| Sbjct 57131 TCTTCTTGATGAGTTAAAATTGTTGCATTAGAAGTAGGATATGCAACACAGGTTAGTACA 57072 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 || ||| ||| | |||||||||||| || || ||||||||| ||| |||||| || Sbjct 57071 AATCCTGCTTTTACTTGATCATCATCTAA-AAGGACTGATCAGATTGATCTACTTCTCCT 57013 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGC--ACCTGCACGACAAGAGTAGTTTAAAT 32798 || | || ||||| |||| ||||| || ||||| | |||||| ||| | || Sbjct 57012 TCTAAGAGTTTGCCTGCGCAAGTAGAACATGCTTCCCTGCTCTACAAGAATAGGGGAGAT 56953 Query 32799 CAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGA-TCATCAGCACA 32847 | | || ||| || |||||||| | || |||||| ||||||| ||| Sbjct 56952 CTAATCCTTGTTCTTCAGCTGCATCTAATATATATTGATTCATCAGGACA 56903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493426714440