Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq72 123 3e-23 seq82 104 3e-17 seq66 104 3e-17 seq17 98.7 1e-15 seq5 86.0 7e-12 >seq72 Length=85273 Score = 123 bits (136), Expect = 3e-23 Identities = 334/503 (66%), Gaps = 10/503 (2%) Strand=Plus/Minus Query 64713 TTGGACTGCGGAAGAAGTT-GATTTGTCCAAAGATCTTGACGACTGGAAGACCCTGAATG 64771 ||||||||| |||||| | || ||||| ||| | || || ||||| | ||| || Sbjct 76143 TTGGACTGCTGAAGAAATCCGACTTGTCAGGTGATTTGGAAGATTGGAAAAAGTTGACTG 76084 Query 64772 AAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTG 64831 | ||||| | || || | | |||||||||||||| || ||||| || | Sbjct 76083 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGATGGTATCG 76024 Query 64832 TTTTTGAGAATATCA-ATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCA 64890 |||| |||||| | | || |||| ||| || || || || ||||| || | Sbjct 76023 TTTTGGAGAATCTTGCAGAAAGATTTGTCGG--GATGTTCAAATTCCTGAAGCACGATGT 75966 Query 64891 TTCTACGCATATCA-ATGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGAT 64949 ||||| | || ||| || || | |||| | ||| ||||| ||||| | | || Sbjct 75965 TTCTATGGATTTCAGATAGCA-ATGGAAAATATCCATTCAGAAACGTATTCTCTACTTAT 75907 Query 64950 TGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTA-TTTGAAGCCATCCAAACTG 65008 |||| ||| || | |||| |||||| | ||| |||||||| || || Sbjct 75906 CGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTACTTTGAAGCAATGGAACGAA 75847 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068 | || |||||||||||||| || |||||||| |||||||| |||| | ||| | Sbjct 75846 TTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCT---TCTGCTT 75790 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 | || || || || || | || ||||| || || || || || ||||| || || | Sbjct 75789 CGTTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTCGGGTTCCT 75730 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 | || | || | ||||||||| ||| | ||||||||||||||| | || || || | Sbjct 75729 TTTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATTTTCCAACG 75670 Query 65189 AACTTATTTCCCGAGATGAGGGT 65211 | || ||||| | ||||||||| Sbjct 75669 AGCTGATTTCAAGGGATGAGGGT 75647 >seq82 Length=95658 Score = 104 bits (114), Expect = 3e-17 Identities = 333/505 (66%), Gaps = 15/505 (3%) Strand=Plus/Plus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAA-GATCTTGACGACTGGAAGACCCTGAATG 64771 ||||||||| |||||| | || ||||| ||| | || || ||||| | ||| || Sbjct 94234 TTGGACTGCTGAAGAAATCGACTTGTCAGGCTGATTTGGAAGATTGGAAAAAGTTGACTG 94293 Query 64772 AAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTG 64831 | ||||| | || || | | |||||||||||||| || ||||| || | Sbjct 94294 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGATGGTATCG 94353 Query 64832 TTTTTG-AGAATATCA-ATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTC 64889 |||| | ||||| | | || |||| ||| || || || || ||||| || | Sbjct 94354 TTTTGGGAGAATCTTGCAGAAAGATTTGTCGG--GATGTTCAAATTCCTGAAGCACGATG 94411 Query 64890 ATTCTACGCATATCA-ATGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGA 64948 ||||| | || ||| || || | |||| | ||| ||||| ||||| | | | Sbjct 94412 TTTCTATGGATTTCAGATAGCA-ATGGAAAATATCCATTCAGAAACGTATTCTCTACTTA 94470 Query 64949 TTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTG 65008 | |||| ||| || | |||| |||||| | ||||||||||| || || Sbjct 94471 TCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTATTTGAAGCAATGGAACGAA 94530 Query 65009 TACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCT 65068 | || |||||||||||||| || |||||||| |||||||| |||| | ||| | Sbjct 94531 TTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTC---TTCTGCTT 94587 Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGC-GTGTGTGGAGGGTATCTTCTTCTCCGG-GTC 65126 | || || || || || | || ||||| | | | || || || || ||||| || || Sbjct 94588 CGTTTGCTGAACGTCTGGTAGCATTTGCTGCGGTTAGAAGGAATATTTTTCTCGGGATTC 94647 Query 65127 ATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAA 65186 || || | || | ||||||||| | | ||||||||||||||| | || || || Sbjct 94648 CTTTTGTTCCATATTTTGGTTGAAAA---GAGGTCTCATGCCAGGCTTGACATTTTCCAA 94704 Query 65187 TGAACTTATTTCCCGAGATGAGGGT 65211 || || ||||| | ||||||||| Sbjct 94705 CGAGCTGATTTCAAGGGATGAGGGT 94729 >seq66 Length=178311 Score = 104 bits (114), Expect = 3e-17 Identities = 314/471 (67%), Gaps = 18/471 (4%) Strand=Plus/Plus Query 64713 TTGGACTGCGGAAGAAGTTGATTTGTCCAAAGATCTTGACGACTGGAAGACCCT-GAATG 64771 ||||||||| |||||| | || ||||| ||| | || |||||||| | | || || Sbjct 7858 TTGGACTGCTGAAGAAATCGACTTGTCAGGTGATTTGGAAGACTGGAAAAAAGTTGACTG 7917 Query 64772 AAAATGAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGA---TGGAA 64828 | ||||| | || || | | |||||||||||||| || || ||| | Sbjct 7918 CAGATGAACGCCACTTTATCTCTCATGTATTGGCATTCTTTGCTTCCTCAGAGTATGGTA 7977 Query 64829 TTGTTTTTGAGAATATCA-ATAACAATTTTG-CGGATGAAGTGCAGATAAGCGAAGCGCG 64886 | ||||| |||||| | | || |||||| ||| || || || || ||||| || Sbjct 7978 TCGTTTTGGAGAATCTTGCAGAAAGATTTTGTCGG--GATGTTCAAATTCCTGAAGCACG 8035 Query 64887 CTCATTCTACGCATATCA-ATGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAAT 64945 | ||||| | || ||| || || | |||| | ||| ||||| ||||| | Sbjct 8036 ATGTTTCTATGGATTTCAGATAGCA-ATGGAAAATATCCATTCAGAAACGTATTCTCTAC 8094 Query 64946 TGATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAA 65005 | || |||| ||| || | |||| |||||| | ||||||||||| || || Sbjct 8095 TTATCGACACATATATAAGAGATGCTCAGGAAAAGGCTCGTTTATTTGAAGCAATGGAAC 8154 Query 65006 CTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAAT--GAAATGGTTTGACACAAAGTC 65063 | || |||||||||||||| || |||||||| | ||||||| |||| | || Sbjct 8155 GAATTCCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAGAAATGGATTGAGTC---TTC 8211 Query 65064 TCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGC-GTGTGTGGAGGGTATCTTCTTCTCCG 65122 | || || || || || || | || ||||| | | || |||| || || ||||| | Sbjct 8212 TGCTTCGTTTGCTGAACGTCTGGTAGC-TTTGCTGCGGTTGAAGGGAATATTTTTCTCGG 8270 Query 65123 GGTCATTCTGCGCT-ATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 | || || || || || | ||||||||| ||| | ||||||||||||||| Sbjct 8271 GTTCCTTTTGTTCTCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGC 8321 >seq17 Length=139726 Score = 98.7 bits (108), Expect = 1e-15 Identities = 215/317 (68%), Gaps = 5/317 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| ||||| || || | ||| ||| || || || ||| || ||| ||||| Sbjct 52282 CCAGGTACAGGAAAAACTCTTTTAGCCAAAGCTATTGCTGGCGAAGCAGGTGTACCATTT 52223 Query 175375 ATCCAGTGCT-CTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | ||| | ||| || | ||||| || |||||||| || || || || || || Sbjct 52222 TT--AGTATTTCTGGATCAGAATTTGTAGAAATGTTTGTAGGAGTAGGAGCGTCTAGAGT 52165 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | || || ||| ||| || |||||| ||| |||||||| || || ||||| || Sbjct 52164 AAGAGACCT-TTTCAAAAAGCTAAAGAAAATGCACCTTGTATTGTATTTATAGATGAAAT 52106 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||| || || | ||| | | | ||| | || ||||| || |||||||| Sbjct 52105 TGATGCTGTTGGTAGACAAAGAGGTACAGGTATTGGTGGAGGCAATGATGAAAGAGAACA 52046 Query 175554 AACAATTAA-TCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGG 175612 ||| |||| ||||||| | || || |||||||| ||||| | || || || | | Sbjct 52045 AACTCTTAATTCAACTATTAACAGAAATGGATGGATTTGAAGGAAATACAGGTATAATTG 51986 Query 175613 TTATTGCGGCCACTAAT 175629 |||| || || |||||| Sbjct 51985 TTATAGCAGCAACTAAT 51969 >seq5 Length=251617 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/201 (71%), Gaps = 7/201 (3%) Strand=Plus/Plus Query 175396 TTTGTGGAGATGTTTGTTGGT-GTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC 175454 ||||| || ||||||||||| || ||||| | | ||||| ||| | ||| | || Sbjct 38134 TTTGTAGAAATGTTTGTTGGAAGTTGGTGCTAGTCGTGTTCGTGATTTATTTACACAAGC 38193 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | | ||| ||| |||||| |||| || ||||| || ||||| || || | || Sbjct 38194 CAAGAAGAATGCACCTTGTATTATCTTTATAGATGAAATAGATGCAGTAGGTAGACAG-- 38251 Query 175515 CAGCGCTGGTGGTAT-GCC--AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACT 175571 || | || ||||| ||| || |||||| || ||||||||||| | |||||| | || Sbjct 38252 -AGAGGTGCAGGTATTGCCGGAGGAAATGATGAAAGAGAACAAACGCTCAATCAATTGCT 38310 Query 175572 CACCGAGATGGATGGCTTTGA 175592 || || |||||||| ||||| Sbjct 38311 AACAGAAATGGATGGTTTTGA 38331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596568727516960