Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq17 401 7e-107 >seq17 Length=139726 Score = 401 bits (444), Expect = 7e-107 Identities = 713/1019 (70%), Gaps = 31/1019 (3%) Strand=Plus/Plus Query 167026 GATGACTGGCTTAAAAGGGATCGTTTTGTTTTTG-TTGGCTGGTCTGG--------ACTT 167076 ||||| ||||| ||| | ||||| ||||| ||| |||| ||||| || |||| Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 167077 CTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTC 167136 | ||| |||| | | || | ||| |||| |||| |||| || || ||||| || Sbjct 27303 TTCCTTGTTCCTAAACCCTAGCC--CTA--GGCGCTTGGTTTACAGGTACAACTTT-GTT 27357 Query 167137 ACGAGTTGGTATACTCATGGACTCGCGTCCAGTTATCTTGAGGGTGCGAACTTTCTTACT 167196 || ||||||||||||||| | || || |||| | || || || ||| | ||| Sbjct 27358 ACTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACT 27416 Query 167197 GCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCT 167256 || ||||| | || ||| || |||||| || || ||||| || ||||||| || Sbjct 27417 GCTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TATGGGGACCA 27475 Query 167257 GAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCG 167316 ||| ||||||| ||||| || ||| ||| |||| || | ||| | ||| || Sbjct 27476 GAAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCT 27535 Query 167317 CTCCACGGAGCCTTTGCTCTCATT-GGTTTCATGCTT-CGACAGTTTGAACTTGCTCGCC 167374 | || || || |||| | | | ||||| || || || || |||||| | || | Sbjct 27536 TTACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAATAGCAAGAT 27593 Query 167375 TGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTA 167434 | | || || | || || ||||| || ||||| || || || ||||| || || ||| Sbjct 27594 TAGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTT-GTTT 27652 Query 167435 GCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAG 167494 || || ||| | ||||| || || ||| || ||||| |||| || || |||| Sbjct 27653 CAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTT--TTGCTCCTAGTTTTGGAG 27710 Query 167495 TCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATC 167554 | || || ||||| |||| | | || | ||||| ||||| |||||||| | |||| Sbjct 27711 TTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATC 27769 Query 167555 CATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATG 167614 |||| |||||||||||||| || || || || ||||| ||||| | | || || |||| Sbjct 27770 CATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATG 27829 Query 167615 GTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCAT 167674 | | || ||||| ||||| || | ||||||||| || || || ||||| | || | Sbjct 27830 GAGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTT 27889 Query 167675 TCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTC 167734 | | || || |||||| |||||||||||||||||||| || || || ||||| | Sbjct 27890 TTACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCAC 27948 Query 167735 AGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTT--ATGTTATTCGT 167792 | || || || ||||||| || ||| | ||||| ||||||||| ||| |||| || Sbjct 27949 AAAT-TTTGGTGTTGCTTT-TCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGT 28006 Query 167793 TCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCG 167852 || |||| ||| | |||||| || ||||| || || || || || | ||| | || Sbjct 28007 GCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACG 28066 Query 167853 TGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTT 167912 ||| || ||||||||||||||||| | | || || ||||||||||| |||||||| || Sbjct 28067 TGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTT 28126 Query 167913 CTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGA-TC 167971 ||||||||||| | || || ||||||||| | |||||||| | ||| | || || Sbjct 28127 TTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTC 28186 Query 167972 AACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 |||| ||||| || ||||| ||||||||||| ||| | ||||| || || || || ||| Sbjct 28187 AACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAA 28244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561247179174800