Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq17 426 2e-114 >seq17 Length=139726 Score = 426 bits (472), Expect = 2e-114 Identities = 736/1045 (70%), Gaps = 27/1045 (3%) Strand=Plus/Minus Query 66584 TTATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGG 66643 ||||||||| ||||| ||||| || | ||| || |||||||||||||| |||||||| || Sbjct 28247 TTATTAAAGGGCATTTCCACGTGGTAAAACCTCCTCTGGGAATACAAA-TTTTCATGTGG 28189 Query 66644 TTGA-TCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGT 66702 |||| || | ||||| |||||| | | ||||||||| | || | || || || | Sbjct 28188 TTGAATCTTGTGTTGCCATCCATGCTCTTATACCTTCATTTAGGAGTAAATTTTTAGTAT 28129 Query 66703 AGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAG 66762 | || || || || ||||| || ||||| || | | ||||| || || || ||||| | Sbjct 28128 AAAAGGTTTCAAATTCTGGATCCTCTGCGGCACGTAATTCTTGAGAAACGAAATCATATG 28069 Query 66763 CACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAG 66822 |||| | || | ||||| || |||||||| || ||||||||||| | || |||| | Sbjct 28068 CACGTAAATTTAATGCAAGTCCTATAATACCAATAGAACTTGTCCATAATCCAGTAACTG 28009 Query 66823 GAACAAACAACAT--AAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGAT 66880 | ||||| | ||| ||||||||| | ||| || ||||| ||| |||| |||||| || Sbjct 28008 GCACAAATAGCATTCAAAGAAATGTAGCCATCTTTTATTAGAAAA-GCAACACCAAA-AT 27951 Query 66881 CTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTC 66940 || ||||| || || || || ||||||||||| ||||||||||| ||| || | Sbjct 27950 TTGTGACCAAAA-CGATTAGCTGTAACCATTGAATAAGTTTCTTCTGATTGTGTTGGTGT 27892 Query 66941 GAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAAC 67000 || ||| ||||||| || || ||| ||||||||| | | ||||| ||||| || | Sbjct 27891 AAAAGCTCTGAAAGTATTAGCAGCTTCGCCATCTTCAAATAAGGTATTTTCTACAGTTGC 27832 Query 67001 ACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAA 67060 |||||||| || | | ||||| ||||| || || || || |||||||||||||| || Sbjct 27831 TCCATGAATAGCGCACAATAATGCTCCACCAAGTATTCCAGCAACACCCATCATATGGAA 27772 Query 67061 CGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGA 67120 || || || |||||||||||||| ||||| | || | || |||| |||||| |||| Sbjct 27771 TGGATTTAAAGTCCAGTTATGGAAGCCTTGCA-AAATAAAATAAATCTAAAGATAGCTGC 27713 Query 67121 GACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGAC 67180 || || ||| ||||| |||||||||| | ||| || || || || || ||||| || Sbjct 27712 AACTCCAAAACTAGGAGC--AAAACCAACTAGCTTGTCCAAGTGGATAAATAAGAAATAC 27655 Query 67181 ACTAACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGAT 67240 ||| ||||| || || || || || || || || ||||| || || | || || | Sbjct 27654 TGAAAC-AAAACTGCAATTGGTCCCGAAAAAGCTATTGCATTATATGGTCTAATTCCTAC 27596 Query 67241 GAGACGTGCCAGTTCAAACTGGCG-AAGCATGAAACCAATT-AGAGCGAAAGCCCCGTGG 67298 | | ||| | |||||| || || || || ||||| ||| | | ||||| || || Sbjct 27595 TAATCTTGCTATTTCAAATTGACGTAAACA--AAACCTATTAATTCCAAAAGCACCATGT 27538 Query 67299 AGCGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGAC 67358 | || ||| |||| | ||||||| ||| ||| | ||||| || |||| Sbjct 27537 AAAGCTGTAAATGTCCATAAACCTCCAATTTGACACCATCTAGTAAAATCACCTTGAGCT 27478 Query 67359 TCAGGACCCC--AAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAG 67416 || || |||| ||| ||| | | ||| || |||||| || ||||| |||| || | Sbjct 27477 TCTGGTCCCCATAAAATAGTA-ATGAG--TGTCCCATACTATTTGCAGGGCTTGATACTG 27421 Query 67417 CCGCTGTGAGAAAATTAGCACCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGC 67476 | || || | ||||||| || || | |||| ||| || | || ||||| ||||| Sbjct 27420 CAGCAGTTA-AAAATTACATCCTTCTAAATAAGAAGAAGCTAAACCATGAGTATACCAAG 27362 Query 67477 TTGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCA---TATAAGCAGTGGGAA 67533 || ||||| || ||||| |||| ||| | || | || | | || | | |||| Sbjct 27361 AAGTAACAAA-GTTGTACCTGTAAACCAAGCGCCTAGGGCTAGGGTTTAGGAACAAGGAA 27303 Query 67534 AAAGAAGT-AGTCCAGACCAACCCA-CAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 || || | | || ||||| || | ||| ||||||||||| ||||| ||||| ||||| Sbjct 27302 AAGTAATTCAAACCTGACCATCCAATTAAATACAAAGCGATCACGTTTTAGCCAATCATC 27243 Query 67592 AAGGACATCGAACCACCCCCGTTGT 67616 || | |||||| | || | |||| Sbjct 27242 AACTAAATCGAATAAACCTCTTTGT 27218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572053563370440