Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq58 125 1e-23 seq36 125 1e-23 seq103 118 2e-21 >seq58 Length=124683 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA----- 193205 ||||| ||||| |||| || || ||||||||||| |||| ||||| | Sbjct 62591 TACCAAGTGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGC 62650 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||| || || ||||| || || | ||||||||| ||||| ||||| || || Sbjct 62651 TCTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTG 62710 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||||||||||| |||| ||| |||||| ||||||| ||||||||| | ||| || Sbjct 62711 TCTTGTATTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATG 62770 Query 193326 GTTTTACCTGTTAGCGTTTTTACA 193349 || || || || || || | |||| Sbjct 62771 GTCTTGCCAGTAAGTGTCTATACA 62794 >seq36 Length=139094 Score = 125 bits (138), Expect = 1e-23 Identities = 174/238 (73%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| ||||| || | ||||| || | |||| ||| || |||||||||||| Sbjct 92193 ATTCCACC-CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCT 92251 Query 193191 GATAACGTTCTAGAATCGTCTAA-TTGTTTTCCGGCAAAAAT-TAATCTCTGTTGATCAG 193248 || | || | | ||| ||||| ||| ||||| ||||| || || | || || || | Sbjct 92252 GAAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTG 92311 Query 193249 GAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTT-AAAATAGTATCGGAAGAC 193307 |||| |||||||| || |||||||| |||| || | |||| ||||||||| |||| | Sbjct 92312 GAGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGC 92371 Query 193308 TCAACTTCTAGAGTTATA----GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| |||||| | || || || || || || ||||||||||| |||||| Sbjct 92372 TCCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Score = 98.7 bits (108), Expect = 2e-15 Identities = 176/250 (70%), Gaps = 14/250 (6%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| |||||| |||| || | ||||| || | |||| ||| || ||||||| Sbjct 91771 ATTTAGCAACCACCCCTCAGACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTA 91830 Query 193185 TAGTCGG---ATAACGTTCTAGA----AT---CGTCTAATTGTTTTCCGGCAAAAATTAA 193234 ||||| | || ||| ||| | || || | | ||| ||||| ||||| || || Sbjct 91831 TAGTCTGGAAATCACGA-CTAAAGCTGATTTCCGACCAGTTGCTTTCCAGCAAATATCAA 91889 Query 193235 T-CTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT-TTTGGTTTTTATATTTAAA 193292 | || || || ||||| |||||||| ||||||||||| || || || | || | Sbjct 91890 AACGTTGCTGGTCTGGAGGGATTCCTTCCTTATCTTGTATCTTGGGACTTGACGTTCTCA 91949 Query 193293 ATAGTATCGGAAGACTCAACTTCTAGAGT-TATAGTTTTACCTGTTAGCGTTTTTACAAA 193351 ||||| || |||| ||| ||||| ||||| || || || ||||| || || || ||||| Sbjct 91950 ATAGTGTCTGAAGGCTCCACTTCAAGAGTGAATGGTCTTGCCTGTAAGTGTCTTCACAAA 92009 Query 193352 TATTTGCATT 193361 ||| |||||| Sbjct 92010 TATCTGCATT 92019 >seq103 Length=203287 Score = 118 bits (130), Expect = 2e-21 Identities = 171/240 (71%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || || || | | ||||| ||||| || | || || |||||||||||| Sbjct 14157 ATACCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAATATTATAGTCC 14216 Query 193191 GATAACGTTCTAGAATCGTCTAATTG--TTTTCCGGCAAAAATTAATCTCTGTTGATCAG 193248 || | ||||| || || | ||| ||| || ||||| || | || |||||||||| Sbjct 14217 GACAGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCTTTGTTGATCAG 14276 Query 193249 GAGGTATTCCTTCTTTATCTTG-TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGAC 193307 | ||||| |||||||||||||| || || | ||| | |||| |||||||| |||| Sbjct 14277 GGGGTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAGTATCCGAAGGT 14336 Query 193308 TCAACTTCTAGAGTTA-------TAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||| |||| | || || ||||| | |||||| |||||||||||||| Sbjct 14337 TCGACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACAAATATTTGCAT 14396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653084255440