Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq72 159 5e-34 seq82 147 3e-30 seq66 132 7e-26 seq103 118 2e-21 seq58 91.5 2e-13 >seq72 Length=85273 Score = 159 bits (176), Expect = 5e-34 Identities = 311/453 (69%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 18144 TATAATATAATAAACACGCAAAATCAGTG-TGTAAACCTTCATCTCTGGATATTAATTCG 18202 || |||| || ||||| ||||||| | || ||||| ||||| || || || | ||| Sbjct 75612 TAGAATACAACAAACATGCAAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCG 75671 Query 18203 TTACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAA 18262 || ||| || || || ||||| | |||||| ||||| | ||||||||| || || Sbjct 75672 TTGGAAAATGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGGAACAAAAG 75731 Query 18263 CTACTAGAAAAGAATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321 || || || ||||| || || || ||| || || |||| | | ||||||||| | Sbjct 75732 GAACCCGAGAAAAATATTCCTTCTACCGCA-GCAAAAGCTACCAGACGTTCAGCAAA-CG 75789 Query 18322 GTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTAT 18381 | |||| |||||||| | ||||||| ||| |||||||| || Sbjct 75790 AAGCAGAAGACTCA--ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAAT 75847 Query 18382 ACTCTCTATAGCATTAAACAAATC-ATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGA 18440 | || || || | ||| || | | | ||||| | | |||| ||||||| ||||||| Sbjct 75848 TCGTTCCATTGCTTCAAAGTAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGA 75907 Query 18441 TTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACG 18500 | | | ||||||| |||| ||||| || ||||||| ||||||||||| | ||| || Sbjct 75908 TAAGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAAC 75967 Query 18501 ATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTA 18560 ||| || || ||| ||||| || | | |||||||||| | | |||||| ||| | Sbjct 75968 ATCGTGCTTCAGGAATTTGAACATCCCGA-CAAATCTTTCTGCAAGATTCTCCAAAACGA 76026 Query 18561 TACCGTCAGCAGATGCGAAAAATGCCAAAACAT 18593 |||| || | || || || |||||||| |||| Sbjct 76027 TACCATCTGAGGAAGCAAAGAATGCCAATACAT 76059 >seq82 Length=95658 Score = 147 bits (162), Expect = 3e-30 Identities = 310/455 (68%), Gaps = 14/455 (3%) Strand=Plus/Minus Query 18144 TATAATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGT 18203 || |||| || ||||| ||||| || || ||||| ||||| || || || | |||| Sbjct 94763 TAGAATACAACAAACATGCAAATTCGCAATGCAAACCCTCATCCCTTGAAATCAGCTCGT 94704 Query 18204 TACTAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAAC 18263 | ||| || || || ||||| | ||||||||| | ||||||||| || | ||| Sbjct 94703 TGGAAAATGTCAAGCCTGGCATGAGACCTCTTTTC---AACCAAAATATGGAA-CAAAAG 94648 Query 18264 TACTA--GAAAAGAATATACCCTCAA--CGCACGCGAACGCTATTAATCTTTCAGCAAAA 18319 | | || || ||||| || || | |||| || || |||| | | ||||||||| Sbjct 94647 GAATCCCGAGAAAAATATTCCTTCTAACCGCA-GCAAATGCTACCAGACGTTCAGCAAA- 94590 Query 18320 CTGTATTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGT 18379 | | |||| |||||||| | ||||||| ||| |||||||| Sbjct 94589 CGAAGCAGAAGACTCA--ATCCATTTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGA 94532 Query 18380 ATACTCTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCG 18439 || | || || || | ||| ||| | | ||||| | | |||| ||||||| |||||| Sbjct 94531 ATTCGTTCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCG 94472 Query 18440 ATTAACAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAAC 18499 || | | ||||||| |||| ||||| || ||||||| ||||||||||| | ||| || Sbjct 94471 ATAAGTAGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAA 94412 Query 18500 GATCTAGCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCT-CATTAAC 18558 ||| || || ||| ||||| || | | |||||||||| | | ||||| | ||| Sbjct 94411 CATCGTGCTTCAGGAATTTGAACATCCCGA-CAAATCTTTCTGCAAGATTCTCCCAAAAC 94353 Query 18559 TATACCGTCAGCAGATGCGAAAAATGCCAAAACAT 18593 ||||| || | || || || |||||||| |||| Sbjct 94352 GATACCATCTGAGGAAGCAAAGAATGCCAATACAT 94318 >seq66 Length=178311 Score = 132 bits (146), Expect = 7e-26 Identities = 306/451 (68%), Gaps = 17/451 (4%) Strand=Plus/Minus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTA--ATT--CGTTACTAAA 18210 ||||| |||||||| || ||||| ||||| || | | | || |||| ||| Sbjct 8387 AAACATGCAAAATCGCAATGCAAACCCTCATCCCTTAACAGTCCCATGAGCGTTGGAAAA 8328 Query 18211 CGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTA-CTAG 18269 || || || ||||| | |||||| ||||| | ||||||||| | ||| | | | Sbjct 8327 TGTCAAGCCTGGCATGAGACCTCTCTTTTTCAACCAAAATATGAGAACAAAAGGAACCCG 8268 Query 18270 AAAAGAATATACCCT-CAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTT 18327 | || ||||| |||| |||| ||| || || |||| | | ||||||||| | Sbjct 8267 AGAAAAATATTCCCTTCAACCGCA-GCAAA-GCTACCAGACGTTCAGCAAA-CGAAGCAG 8211 Query 18328 ATTGCTCAGTATCCATTTTT--GTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTC 18385 | |||| |||||||| | | ||||||| ||| |||||||| || | Sbjct 8210 AAGACTCA--ATCCATTTCTCAGAGCCCATTTGGCTTTCTTCTCAATACACGGAATTCGT 8153 Query 18386 TCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC 18445 || || || | ||| ||| | | ||||| | | |||| ||||||| |||||||| | Sbjct 8152 TCCATTGCTTCAAATAAACGAGCCTTTTCCTGAGCATCTCTTATATATGTGTCGATAAGT 8093 Query 18446 AAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTA 18505 | ||||||| |||| ||||| || ||||||| ||||||||||| | ||| || ||| Sbjct 8092 AGAGAATACGTTTCTGAATGGATATTTTCCATTGCTATCTGAAATCCATAGAAACATCGT 8033 Query 18506 GCCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACC- 18564 || || ||| ||||| || | | ||||||||||| | | |||||| ||| ||||| Sbjct 8032 GCTTCAGGAATTTGAACATCCCGACAAAATCTTTCTGCAAGATTCTCCAAAACGATACCA 7973 Query 18565 --GTCAGCAGATGCGAAAAATGCCAAAACAT 18593 || | || || || |||||||| |||| Sbjct 7972 TACTCTGAGGAAGCAAAGAATGCCAATACAT 7942 >seq103 Length=203287 Score = 118 bits (130), Expect = 2e-21 Identities = 172/239 (72%), Gaps = 12/239 (5%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTA-------CATTAGAAGTCGA 155875 |||||||||||| | ||||| ||||| ||||| || | || | ||||| ||||| Sbjct 14396 ATGCAAATATTTGTGAAAACGTTGACAGGAAAGACCAGTAAGCCTAACGTTAGAGGTCGA 14337 Query 155876 AGATTCTGATAATATTTTAAACGTGAAAAATAAAATA-CAAGATAAAGAAGGCATACCTC 155934 | ||| |||| ||| ||| |||||| || || |||||||||||||| ||||| | Sbjct 14336 ACCTTCGGATACTATAGAAAATGTGAAATCAAAGATTTCAAGATAAAGAAGGTATACCCC 14277 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAA--GCAGCTCGAAGATACCAGAACTTTATC 155992 | || |||||||| | || | ||| || || ||| |||||||| |||||| | || Sbjct 14276 CTGATCAACAAAGGCTTATATTTGCTGGGAAATGCAACTCGAAGACGGAAGAACTCTGTC 14217 Query 155993 AGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || |||||||| || ||| || | ||| | || || || || || ||||| || ||| Sbjct 14216 GGACTATAATAT-TCAAAAGGAATCCACGTTGCACTTGGTATTGAGGTTAAGGGGAGGT 14159 >seq58 Length=124683 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 5/170 (3%) Strand=Plus/Minus Query 155841 ACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTG 155900 ||| | ||||| || || ||||| || ||||| || ||| || | |||| |||||| Sbjct 62787 ACACTTACTGGCAAGACCATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAACGTA 62728 Query 155901 AAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCC 155960 || ||||||||||| || || || || ||||| || ||||| | ||||| | ||| Sbjct 62727 AAGTCCAAAATACAAGACAAGGAGGGAATTCCTCCCGATCAACAGCGTTTGATATTTGCA 62668 Query 155961 GGTAAGCAGCTCGAAGA-----TACCAGAACTTTATCAGATTATAATATA 156005 || ||||| | ||||| || |||||| |||| || ||||||||| Sbjct 62667 GGCAAGCAATTGGAAGAGCTCGTAGAAGAACTCTATCGGACTATAATATA 62618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870929637200