Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq103 105 1e-17 seq77 105 1e-17 seq58 89.7 1e-12 seq36 89.7 1e-12 >seq103 Length=203287 Score = 105 bits (116), Expect = 1e-17 Identities = 185/264 (70%), Gaps = 14/264 (5%) Strand=Plus/Plus Query 192296 TTAGTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAG 192354 || ||| |||||||| || || | | ||||| || || || || | || ||| || Sbjct 14146 TTGGTTCTATAATACCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGA- 14204 Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTG--TTTACCAGCAAAGATTAATC 192412 |||||||| || || | |||| | | || || | ||| ||| |||||||| || | | Sbjct 14205 ATATTATAGTCCGACAGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCC 14264 Query 192413 TCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG-TATTTTATTTTTTACATTAGTTATA 192471 | ||||||||||| ||||| |||||||||||||| || || ||| ||||| |||| Sbjct 14265 TTTGTTGATCAGGGGGTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATA 14324 Query 192472 GAATCTGACGATTCTACTTCTA-------GAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 | ||| || | ||| || |||| | || |||| || || || || ||||| | Sbjct 14325 GTATCCGAAGGTTCGACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCAC 14384 Query 192525 AAATATCTGCATTTTATTAGAAAA 192548 |||||| |||| | | ||||||| Sbjct 14385 AAATATTTGCA--TGACTAGAAAA 14406 >seq77 Length=161124 Score = 105 bits (116), Expect = 1e-17 Identities = 169/237 (71%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| || |||||||| || || || | ||||| ||| ||| || || || || || Sbjct 114518 ATTCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTC 114577 Query 192366 A-GATAATGTTCGTTCAT--CATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || | || || ||| | ||||| |||||||| ||||| || || | || || || Sbjct 114578 TCGAGAGTG--CGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTC 114635 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACA--TTAGTTATAGAATCTGAC 192480 || || || ||||| || |||||||| || || ||| || |||| |||||| Sbjct 114636 TGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAG 114695 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 | || ||||| ||||||||||| || ||||| | || || | |||||||||||| Sbjct 114696 GGCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114752 >seq58 Length=124683 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/197 (70%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 192327 TACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCA----- 192381 ||| || || || |||| || || |||||||| || |||| |||| | | Sbjct 62591 TACCAAGTGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGC 62650 Query 192382 TCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTA 192441 || |||||||| || || ||||| || || | ||||||||| || || ||||| || || Sbjct 62651 TCTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTG 62710 Query 192442 TCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATG 192501 ||||||||||| ||||| || |||| || || | || ||||| | ||||||| Sbjct 62711 TCTTGTATTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATG 62770 Query 192502 GTTTTACCAGTTAATGT 192518 || || ||||| | ||| Sbjct 62771 GTCTTGCCAGTAAGTGT 62787 >seq36 Length=139094 Score = 89.7 bits (98), Expect = 1e-12 Identities = 169/239 (71%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 || ||||| || | ||| ||||| || || | |||| ||| ||| || |||||||| || Sbjct 92193 ATTCCACC-CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGA-ATATTATAGTC 92250 Query 192366 AGATAATGTTCGTTCATCATCCAA-TTGTTTACCAGCAAAGATTAAT-CTCTGTTGATCA 192423 || | || || |||| || || ||| || |||||||| || || | || || || Sbjct 92251 TGAAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCT 92310 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA-TAGAATCTGACGA 192482 || || |||||||| || |||||||| || || ||||| | | ||| |||||| | Sbjct 92311 GGAGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGG 92370 Query 192483 TTCTACTTCTAGAGTA-ATG---GTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||| | | || || || || | ||| || | ||||||||||||| Sbjct 92371 CTCCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984478524202950