Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq77 120 5e-22 seq103 105 1e-17 seq58 89.7 9e-13 seq36 89.7 9e-13 >seq77 Length=161124 Score = 120 bits (132), Expect = 5e-22 Identities = 171/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTC-TTTAGAAATATTATAATC 171898 || ||||| || || ||||| || || || | ||||| ||| ||| ||||| || || || Sbjct 114518 ATTCCACCCCTTAGACGTAAGACCAAGTGGAGAGTAGACTCCTTTTGAAATGTTGTAGTC 114577 Query 171899 TGATAAAGATCGTTCGT--CATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 | | || || | | | ||||| |||||||| |||||||| || | || ||||| Sbjct 114578 TCG-AGAGTGCGACCATACCTTCCAACTGTTTACCTGCAAAAATCAAACGTTGCTGGTCT 114636 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACA--TTAGTTATAGTATCTGACG 172014 || || || ||||| || |||||||| || || ||| || ||||||||||| | Sbjct 114637 GGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCTCAATAGTATCTGAGG 114696 Query 172015 ATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| ||||||||||| || ||||| | || || | ||||||||||||| Sbjct 114697 GCTCCACTTCAAGAGTAATGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114752 Score = 91.5 bits (100), Expect = 3e-13 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAA-TATTATAATC 171898 || ||||| || || ||||| || || || | ||||| ||| || ||| | || || || Sbjct 113824 ATTCCACCCCTCAGACGTAAGACCAAGTGAAGAGTAGACTCCTTTGAAGCTGTTGTAGTC 113883 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCA-GCA--AAAATTAATCTCTGTTGGTC 171955 ||| | || || | || ||||| ||||| ||| || ||||| || | || ||||| Sbjct 113884 TGAGAGAGTACGACCATCTTCCAACTGTTTCCCAAGCTGCAAAATCAAACGTTGCTGGTC 113943 Query 171956 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGA 172015 || || || ||||| || |||||||| || || ||| ||||| ||||| | Sbjct 113944 TGGGGGAATACCTTCCTTGTCTTGTATCTTCGACTTGACAGCTTCAATAGTGTCTGAGGG 114003 Query 172016 TTCTACTTCTAGAGT--AATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| |||| | |||| || ||||| | || || | ||||||||||||| Sbjct 114004 CTCCACTTCAAGAGCTGACTGGTCTTCCCAGTAAGAGTCTTTACGAATATCTGCATT 114060 >seq103 Length=203287 Score = 105 bits (116), Expect = 1e-17 Identities = 175/251 (70%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 171829 TTAGTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAA 171888 || ||| |||||||| || || | | ||||| || || || || | || || || Sbjct 14146 TTGGTTCTATAATACCTCCCCTTAACCTCAATACCAAGTGCAACGTGGATTCCTTTTGAA 14205 Query 171889 TATTATAATCTGATAAAGATCGTTCGTCATCCAATTG--TTTACCAGCAAAAATTAATCT 171946 ||||||| || || | || || | |||| || | ||| ||| |||||||| || | || Sbjct 14206 TATTATAGTCCGACAGAGTTCTTCCGTCTTCGAGTTGCATTTCCCAGCAAATATAAGCCT 14265 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTG-TATTTTATTTTTTACATTAGTTATAG 172005 ||||| ||||| ||||| |||||||||||||| || || ||| ||||| ||||| Sbjct 14266 TTGTTGATCAGGGGGTATACCTTCTTTATCTTGAAATCTTTGATTTCACATTTTCTATAG 14325 Query 172006 TATCTGACGATTCTACTTCTA-------GAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 |||| || | ||| || |||| | || |||| || || || || ||||| | Sbjct 14326 TATCCGAAGGTTCGACCTCTAACGTTAGGCTTACTGGTCTTTCCTGTCAACGTTTTCACA 14385 Query 172059 AATATCTGCAT 172069 ||||| ||||| Sbjct 14386 AATATTTGCAT 14396 >seq58 Length=124683 Score = 89.7 bits (98), Expect = 9e-13 Identities = 139/197 (71%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 171860 TACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTT--CG--- 171914 ||| || || || |||| || || |||||||| || |||| || || | || Sbjct 62591 TACCAAGTGCAAGGTAGATTCCTTTTGTATATTATAGTCCGATAGAGTTCTTCTACGAGC 62650 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || || ||||| || || | |||||| || || || ||||| || || Sbjct 62651 TCTTCCAATTGCTTGCCTGCAAATATCAAACGCTGTTGATCGGGAGGAATTCCCTCCTTG 62710 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||||||||| ||||| || ||||| || || | || ||||| | ||||||| Sbjct 62711 TCTTGTATTTTGGACTTTACGTTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATG 62770 Query 172035 GTTTTACCAGTTAATGT 172051 || || ||||| | ||| Sbjct 62771 GTCTTGCCAGTAAGTGT 62787 >seq36 Length=139094 Score = 89.7 bits (98), Expect = 9e-13 Identities = 167/238 (70%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| || | || ||||| || || | |||| ||| || ||||||||| ||| Sbjct 92193 ATTCCACC-CTCAAACGCAATACCAAGTGAAGGGTAGACTCCTTTTGAATATTATAGTCT 92251 Query 171900 GATAAAGATCGTTCGTCATCCAA-TTGTTTACCAGCAAAAATTAAT-CTCTGTTGGTCAG 171957 || | || || | || || || ||| || |||||||| || || | || ||||| | Sbjct 92252 GAAAGAGTACGACCATCTTCTAAGTTGCTTTCCAGCAAATATCAAAACGTTGCTGGTCTG 92311 Query 171958 GTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTA-TAGTATCTGACGAT 172016 | || |||||||| || |||||||| || || ||||| | | |||||||||| | Sbjct 92312 GAGGAATTCCTTCCTTGTCTTGTATCTTGGACTTGACATTTCTCAATAGTATCTGAAGGC 92371 Query 172017 TCTACTTCTAGAGT--AA--TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| ||||| || || || || || | ||| || | |||||||||||| Sbjct 92372 TCCACTTCAAGAGTTGAAGCACGTCTTGCCGGTAAGTGTCTTTACAAATATCTGCATT 92429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134676238600