Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq17 168 2e-36 seq74 143 8e-29 seq5 132 1e-25 seq72 127 6e-24 seq103 109 2e-18 >seq17 Length=139726 Score = 168 bits (186), Expect = 2e-36 Identities = 332/477 (70%), Gaps = 23/477 (5%) Strand=Plus/Plus Query 288883 TCTAATATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTT-AAA 288941 ||||||| ||| ||| || |||||||| | |||| ||| | ||| ||| ||| Sbjct 51952 TCTAATACATCAATTCTATTAGTTGCTGCTATAACAATTATACCTGTA-TTTCCTTCAAA 52010 Query 288942 TCCATCCATACTTGTTAAAATTTGA-TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTC 289000 ||||||||| |||||| | |||| ||||| |||||||| ||||||||||| || | Sbjct 52011 TCCATCCATTTCTGTTAATAGTTGAATTAAGAGTTTGTTCTCTTTCATCATTGCCTCCAC 52070 Query 289001 TTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCA 289060 ||| ||| | | | || || | ||||||||||||||||||| || || || | | Sbjct 52071 C--AAT-ACCTGTACCTCT---TTGTCTACCAACAGCATCAATTTCATCTATAAATACAA 52124 Query 289061 CACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGAC 289120 ||| || | ||||| | | || || ||| | |||||||| | || ||||| | | Sbjct 52125 TACAAGGTGCATTTTCTTTAGCTTTTTGAAA-AGGTCTCTTACTCTAGACGCTCCTACTC 52183 Query 289121 CAACATACATTTCTACAAATTCAGAAGCGG--ATACTTGAATGAATGTTACATTTGCTTC 289178 | ||| |||||||||||||||| || | | ||||| | |||| |||| |||||| Sbjct 52184 CTACAAACATTTCTACAAATTCTGATCCAGAAATACT---AAAAATGGTACACCTGCTTC 52240 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 ||| || | || | || | ||| || || ||||| || |||| || | | || || Sbjct 52241 GCCAGCAATAGCTTTGGCTAAAAGAGTTTTTCCTGTACCTGGTGCACCAACAAGTAATAC 52300 Query 289239 TCCCTTTGGTACTTTTGCCCC---AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTC 289295 ||| ||||| | | | || || ||||| || || | || |||| |||||||| | Sbjct 52301 TCCTTTTGGAATTCTAGCACCGATAGCAG---TAAATCTTTC-TGGCTTTTTAAAAAGT- 52355 Query 289296 TACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||||||||| | || || | ||| || || ||| ||||| | |||| ||||||| Sbjct 52356 TACAATTTCTTGAAACTCTTCTTTAGCTTCTTCAATGCCTGCAATATCATCAAAAGT 52412 >seq74 Length=163707 Score = 143 bits (158), Expect = 8e-29 Identities = 321/474 (68%), Gaps = 16/474 (3%) Strand=Plus/Plus Query 155909 TACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA 155968 ||| |||| |||||| | ||| |||| | | |||| || | || | ||| | || Sbjct 151744 TACTCGCTTCATAAACAAATCGGGAACCCATAAACCATAAAATAAATCTCGTGC--TCGA 151801 Query 155969 --CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATAT---CAGGATGG 156023 ||| || | || |||||||| | | ||||| || ||||| || | | ||| Sbjct 151802 TTCTCTTCCTTTCCATGATTCTTTCTCAAATCTAAAAA---CTCAAAATGGTCGGCATGC 151858 Query 156024 TGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATAC 156080 ||||||| ||| ||||||||| || || ||||| || || ||||| ||||| Sbjct 151859 CAAGGCTCCAAATAAATAGCAAAAGCTCCTTTTCTCTTTCCTCCTCCTTGATCGACATAT 151918 Query 156081 CGAGCAGTCTTATTGAAGACACCTAGCATAGG-AATAATACCATTGGAAGTGCCATTGGT 156139 | ||||| | ||| || || | |||||||| || ||| ||||||||||| |||||||| Sbjct 151919 CTCGCAGTATCATTAAATACTCGAAGCATAGGGAACAATGCCATTGGAAGTTCCATTGGT 151978 Query 156140 TCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGA 156199 || ||||||| ||| | | |||| | |||| | ||||||||| || | Sbjct 151979 ACCTCGAATATACGATTTGGTAGCTCGAATGTCGTGAACTGCCAATCCAATACCGCCAGC 152038 Query 156200 CCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATC 156259 | ||||||||| ||| || ||| | ||||| |||| ||||||||||| || || Sbjct 152039 ACTTTTAGAAATCACAGCACAGCTCTTCAAAGTATCATAAATGCCTTCAATAGAGTCTTC 152098 Query 156260 TTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGC-GTTGAATA 156318 ||| | || | | || ||| ||| |||||||| ||||| || || ||||| | Sbjct 152099 CGTCATAGTGAGCAAGAAACAAGAAGATAACTGAGGTCGAGGTGTACCGGCATTTGAACA 152158 Query 156319 GTGTAGGTGTTGCATGAATAAAATACTTATTAGAC-ATATAATCGTATGTCTCC 156371 || || | ||||| ||||||| || |||| || ||||| || |||||| Sbjct 152159 AAGTGGGCGAAGCATGCGTAAAATATTTTCGAGACAATGTAATCATAAGTCTCC 152212 >seq5 Length=251617 Score = 132 bits (146), Expect = 1e-25 Identities = 226/324 (70%), Gaps = 8/324 (2%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| ||||| | |||||| || |||||||| |||||||||||| || Sbjct 38329 AAAACCATCCATTTCTGTTAGCAATTGATTGAGCGTTTGTTCTCTTTCATCATTT---CC 38273 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAAT 289058 || | | ||| | | | ||| | | |||| || ||||| ||||| || || || || Sbjct 38272 TCCGGCAATACCTGCACCTCTC---TGTCTACCTACTGCATCTATTTCATCTATAAAGAT 38216 Query 289059 CACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAG 289118 | ||| || | ||| | | || || |||||| || | ||||| || |||| Sbjct 38215 AATACAAGGTGCATTCTTCTTGGCTTGTGTAAATAAATCACGAACACGACTAGCACCAAC 38156 Query 289119 A-CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT-TGCT 289176 |||||| ||||||||||||| || ||| | || | || ||| | | |||| Sbjct 38155 TTCCAACAAACATTTCTACAAACTCCGAACCAGAAATGGAAAAGAAGCCCAACTCCTGCT 38096 Query 289177 TCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGA 289236 || ||||| ||||||||||| | | ||||| || ||||| || ||||| |||||||| Sbjct 38095 TCACCTGCCACTGCCCTCGCAAACAAAGTCTTTCCAGTTCCTGGAGGTCCTTCTAATAGG 38036 Query 289237 ACTCCCTTTGGTACTTTTGCCCCA 289260 ||||| | || ||||| || ||| Sbjct 38035 ACTCCTCTAGGCACTTTGGCACCA 38012 >seq72 Length=85273 Score = 127 bits (140), Expect = 6e-24 Identities = 305/449 (68%), Gaps = 17/449 (4%) Strand=Plus/Minus Query 133196 ACTGGGGATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 |||| |||||| || ||||| ||| ||| | || || || |||||| | ||||| Sbjct 76087 ACTGCAGATGAACGCCACTTTATCTCTCATG-TATTGGCATTCTTTGCTTCCTCAGATGG 76029 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 ||| ||| | || ||| | | | | | ||| | || || |||||| | | ||||| || Sbjct 76028 TATCGTTTTGGAGAATCTTGCAGAAAGATTTGTCGG-GATGTTCAAATTCCTGAAGCACG 75970 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCT 133374 || ||||| | ||||| || ||||||||||||||||| || |||||| || Sbjct 75969 ATGTTTCTATGGATTTCAGATAGCAATGGAAAATATCCATTCAGAAACGTATTCTCTACT 75910 Query 133375 AATTGATACTTACATCAAAGATACCGTCCAGAA---GCACAA--ACTATTCAACGCCATT 133429 || || || || || | |||| | || ||| || | ||| || || || || Sbjct 75909 TATCGACACATATATAAGAGATGC--TCAGGAAAAGGCTCGTTTACT-TTGAA-GCAATG 75854 Query 133430 -AGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAA 133488 | |||||| || |||||| | |||||| | | |||||| | |||||||| || Sbjct 75853 GAACGAATT-CCGTGTATTGAGAAGAAAGCCAAATGGGCTCTGAAATGGATTGAGTCTTC 75795 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 | || |||||| ||||| || |||||||||| ||||| || || |||||| Sbjct 75794 TGCTTCG---TTTGCTGAACGTCTGGTAGCTTTTGCTGCGGTAGAAGGAATATTTTTCTC 75738 Query 133549 TGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608 ||| | || || || || |||||| | |||||| | ||| | | || || || || Sbjct 75737 GGGTTCCTTTTGTTCCATATTTTGGTTGAAAAAGAGAGGTCTCATGCCAGGCTTGACATT 75678 Query 133609 TTCTAACGAACTTATTTCAAGGGACGAGG 133637 ||| ||||| || ||||||||||| |||| Sbjct 75677 TTCCAACGAGCTGATTTCAAGGGATGAGG 75649 >seq103 Length=203287 Score = 109 bits (120), Expect = 2e-18 Identities = 257/379 (68%), Gaps = 12/379 (3%) Strand=Plus/Minus Query 288977 GTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAG 289036 |||| |||||||||||| |||| | | ||| | | | ||| | | ||||||| | Sbjct 60766 GTTCTCTTTCATCATTT---CCTCCAGCAATACCAGCACCTCTC---TGTCTACCAACTG 60713 Query 289037 CATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATT 289096 |||| ||||| ||||| || || | ||| || | ||| | | | || ||||||||| | Sbjct 60712 CATCTATTTCATCAATAAAGATGATACAAGGTGCATTCTTT-TGGCTTGTGCAAATAAAT 60654 Query 289097 CTCTTACACGGGATG-CTCCAAGACCAACATA-CATTTCTACAAATTCAGAAGCGGATAC 289154 | | |||||| || | | |||||| | |||||||||||| |||| ||| | | Sbjct 60653 CACGAACACGGACTGGCAGGGACGCCAACAAAACATTTCTACAAACTCAG-AGCCGGCAA 60595 Query 289155 TTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 | || |||| || ||||| || ||||| || |||||||| ||||| || ||||| Sbjct 60594 TAGACAAAATGGAACTCCCGCTTCTCCAGCTACGGCTCTCGCCAGTAGTGTTTTTCCTGT 60535 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACT-TTTGCCCCAGCAGACTTATATT 289273 ||||| || || || | | |||||| || | | ||||| || | || | Sbjct 60534 ACCAGGAGGCCCTTCGAGAATAACTCCACGGGGAAATCTTTGCTCCTAATTGCGTAAAAC 60475 Query 289274 TCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATC 289333 || | | ||||| |||| ||||| |||||||||||| ||| || | || || | Sbjct 60474 GATCCGAG-TCTTTCAAAAGGATACAACCTCCTCAAGTTCAACTTTGGCTCCGTCGCAAC 60416 Query 289334 CTGCTACATCAGCAAAAGT 289352 | || |||||| |||||| Sbjct 60415 CAGCAACATCATTAAAAGT 60397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815393653429