Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq17 430 1e-115 >seq17 Length=139726 Score = 430 bits (476), Expect = 1e-115 Identities = 723/1021 (71%), Gaps = 29/1021 (3%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTG-TGGGGTGGTCTGGACT--ACTACTT 159362 ||||| ||||| ||||| ||||||||||| ||| | || ||||| || | | ||||| Sbjct 27243 GATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTACTT 27302 Query 159363 CTTCCCACTGCTTAT---CTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACG 159419 |||| | | || || ||| | |||| |||| |||| || ||| |||| ||||| Sbjct 27303 -TTCCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTT-GTTACT 27360 Query 159420 AGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCA 159479 |||||| || || ||| | ||| ||| ||| | || || ||| ||| | || || Sbjct 27361 TCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTT-TAACTGCT 27419 Query 159480 GCTGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTT--GGGGTCCTG 159537 || || || | ||||| | |||||| || ||| | | ||| ||| |||| || | Sbjct 27420 GCAGTATCAAGCCCTGCAAATAGTATGGGACA--CTCAT-TACTATTTTATGGGGACCAG 27476 Query 159538 AGTCTCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCAC 159597 | |||| || |||| | ||||| ||| |||| || ||||||| ||| || Sbjct 27477 AAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTT 27536 Query 159598 TCCACGGTGCCTTCGCCCT-AATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTC 159656 | || ||||| || | | ||| ||||| | | ||||| |||||| | ||| | | Sbjct 27537 TACATGGTGCTTTTGGAATTAATAGGTTTTGTT-TACGTCAATTTGAAATAGCAAGATTA 27595 Query 159657 ATTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTT-TGTCAG 159715 | || || | || || ||||| || || || || || || ||||| ||||| | |||| Sbjct 27596 GTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTTGTTTCAG 27655 Query 159716 CGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGT 159775 | || || || || ||| | || || | |||||||||| ||||| ||||| || Sbjct 27656 --TATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGAGT 27711 Query 159776 GGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCC 159835 ||||| ||||||||||| | || || | ||||| || || |||||||| |||||||| Sbjct 27712 TGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATCC 27770 Query 159836 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGG 159895 |||||||||||||| |||||||| ||||| ||||||||| || | | || || ||||| Sbjct 27771 ATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATGG 27830 Query 159896 CGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTT 159955 | |||||||| || || | | ||||||||| ||| || ||||| || | || || Sbjct 27831 AGCAACTGTAGAAAATACCTTATTTGAAGATGGCGAAGCTGCTAATACTTTCAGAGCTTT 27890 Query 159956 TGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCA 160015 | |||| ||| || || ||||| || ||||| || || || || || ||||| || Sbjct 27891 TACACCAACACAATCAGAAGAAACTTATTCAATGGTTACAGCTAATCG-TTTTGGTCACA 27949 Query 160016 GATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTT--CATGTTGTTTGTG 160073 || || ||| |||| |||||||| || | ||||| |||||||| ||| | |||||| Sbjct 27950 AAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTACATTTCTTTGAATGCTATTTGTG 28007 Query 160074 CCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGT 160133 || |||| || | |||||| |||||||| ||||| || ||||| | ||| | ||| Sbjct 28008 CCAGTTACTGGATTATGGACAAGTTCTATTGGTATTATAGGACTTGCATTAAATTTACGT 28067 Query 160134 GCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTC 160193 || || |||||||| |||||| | | || ||||| |||||||||||||| ||||| Sbjct 28068 GCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAGAGGATCCAGAATTTGAAACCTTT 28127 Query 160194 TACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGA-TCA 160252 || || ||||| | || | || ||||| || | |||||| ||||| | || ||| Sbjct 28128 TATACTAAAAATTTACTCCTAAATGAAGGTATAAGAGCATGGATGGCAACACAAGATTCA 28187 Query 160253 ACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAATA 160312 ||| |||||||| ||| | |||||||| || || || || | || || ||||||||||| Sbjct 28188 ACCACATGAAAA-TTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAATGCCCTTTAATA 28246 Query 160313 A 160313 | Sbjct 28247 A 28247 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/193 (72%), Gaps = 3/193 (2%) Strand=Plus/Plus Query 158745 ATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTG 158804 ||||||| || |||| ||||| |||||| |||| | ||| | || |||||| | | Sbjct 56914 ATCAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTCCCCTATTCTTGTAGAG 56973 Query 158805 CTGGT--GCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGA 158862 | || || || ||| | || ||||| ||| | || ||| || ||||| ||| Sbjct 56974 CAGGGAAGCATGTTCTACTTGCGCAGGCAAACTCTTAGAAGGAGAAGTAGATCAATCTGA 57033 Query 158863 TCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATA 158922 |||||| || ||||| |||||||| | |||||||||||| || || ||||| ||||| Sbjct 57034 TCAGTCCTT-TTAGATGATGATCAAGTAAAAGCAGGATTTGTACTAACCTGTGTTGCATA 57092 Query 158923 TCCAACATCTGAT 158935 ||| || ||| || Sbjct 57093 TCCTACTTCTAAT 57105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548373598002440