Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq17 401 7e-107 >seq17 Length=139726 Score = 401 bits (444), Expect = 7e-107 Identities = 661/932 (71%), Gaps = 20/932 (2%) Strand=Plus/Plus Query 152452 GGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGT 152511 |||| |||| |||| || || ||||| | || |||||||||||| || || || | Sbjct 27329 GGCGCTTGGTTTACAGGTACAACTTT-GTTACTTCTTGGTATACTCATGGTTTAGCTTCT 27387 Query 152512 TCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATG 152571 || ||| | || || || ||| | ||||| ||||| || | || ||| || |||| Sbjct 27388 TCTTATTTAGAAGGATGTAATTTT-TAACTGCTGCAGTATCAAGCCCTGCAAATAGTATG 27446 Query 152572 GGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGATGGATT 152631 || || || | || || | ||||| || || |||||||| ||||| |||||| | Sbjct 27447 GGACACTCATTACTATTT-TATGGGGACCAGAAGCTCAAGGTGATTTTACTAGATGGTGT 27505 Query 152632 CAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCT-AATCGGTTT 152690 || | ||||| | ||| | ||| || | || || ||||| | | ||| ||||| Sbjct 27506 CAAATTGGAGGTTTATGGACATTTACAGCTTTACATGGTGCTTTTGGAATTAATAGGTTT 27565 Query 152691 CATGCTT-CGCCAGTTTGAACTGGCACGTCTCATCGGTATCCGTCCCTACAATGCTATTG 152749 || || || || |||||| | ||| | | | || || | || || ||||| || | Sbjct 27566 --TGTTTACGTCAATTTGAAATAGCAAGATTAGTAGGAATTAGACCATATAATGCAATAG 27623 Query 152750 CGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAAT 152809 | || || || || || || ||||| ||| || ||||| || || || || || ||| Sbjct 27624 CTTTTTCGGGACCAATTGCAGTTTT-GTTTCAGTATTTCTTATTTATCCACTTGGACAAG 27682 Query 152810 CGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCC 152869 | |||||||||| ||||| ||| || || ||||| ||||| |||| || | || Sbjct 27683 CTAGTTGGTTTT--GCTCCTAGTTTTGGAGTTGCAGCTATCTTTAGATTTATTTTATTT- 27739 Query 152870 TTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTT 152929 | ||||| ||||| |||||||| || ||||| || ||||||||||||||||| || || Sbjct 27740 TGCAAGGCTTCCATAACTGGACTTTAAATCCATTCCATATGATGGGTGTTGCTGGAATAC 27799 Query 152930 TGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAG 152989 | || || || || | | || |||||||| | || ||||| ||||| || | | ||| Sbjct 27800 TTGGTGGAGCATTATTGTGCGCTATTCATGGAGCAACTGTAGAAAATACCTTATTTGAAG 27859 Query 152990 ATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGC-ACTCAAGAAGAAGAGACCTAT 153048 |||| ||| || || ||||||| |||||| ||| | || ||| |||||| || ||| Sbjct 27860 ATGGCGAAGCTGCTAATACTTTCAGAGCTTT-TACACCAACACAATCAGAAGAAACTTAT 27918 Query 153049 TCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAA 153108 || |||||||| ||||| ||||| ||||| || || ||||| |||||||| |||||| Sbjct 27919 TCAATGGTTACAGCTAATCGTTT-TGGTCACAAAT-TTTGGTGTTGCTTTT-CTAATAAA 27975 Query 153109 CGCTGGCTTCATTTCTTT--ATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTA 153166 | ||||| ||||||||| ||||| ||||| || |||| || | ||||| ||||| Sbjct 27976 AGATGGCTACATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTA 28035 Query 153167 TTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCA 153226 |||| || || || ||||| | ||| | ||||| || ||||| || ||||||||| | Sbjct 28036 TTGGTATTATAGGACTTGCATTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTAC 28095 Query 153227 GGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAG 153286 | || |||| ||||| |||||||| || || ||||| || ||| | || | || |||| Sbjct 28096 GTGCCGCAGAGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAG 28155 Query 153287 GTCTTCGTGCTTGGTTGGCACCTGTTGA-CCAACCTCATGAGAACTTCGTGTTCCCTGAA 153345 || | | || ||| ||||| | || ||||| ||||| || || || ||||| || Sbjct 28156 GTATAAGAGCATGGATGGCAACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAG 28214 Query 153346 GAGGTATTGCCACGAGGCAACGCTCTGTGATA 153377 ||||| || ||||| || || || || | ||| Sbjct 28215 GAGGTTTTACCACGTGGAAATGCCCTTTAATA 28246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/229 (71%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 152001 CAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCT 152060 || || || || ||||| ||||| ||||||||| | ||| | ||| |||||| | || Sbjct 56916 CAATATATATTAGATGCAGCTGAAGAACAAGGATTAGATCTCCCCTATTCTTGTAGAGCA 56975 Query 152061 GGT--GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACA-GTTGATCAGAGTGAC 152117 || |||||||| |||| || || || | | | || | | | || ||||| ||| Sbjct 56976 GGGAAGCATGTTCTACTTGCGCAGGCAA-ACTCTTAGAAGGAGAAGTAGATCAATCTGAT 57034 Query 152118 CAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGTGTTGCATAT 152177 || || || || |||||||| || | || ||||||| || || ||||||||||||||| Sbjct 57035 CAGTCCTT-TTAGATGATGATCAAGTAAAAGCAGGATTTGTACTAACCTGTGTTGCATAT 57093 Query 152178 CCAACTTCTGATGTCACCCTCATGACTGAACAAGAGGAGTCGCTCTACT 152226 || |||||| ||| || | | ||| | ||||| || || | |||| Sbjct 57094 CCTACTTCTAATGCAACAATTTTAACTCATCAAGAAGAATCATTATACT 57142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 148131 CGGGGTGTAGCTTAGCTTGGTA-GAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAA 148189 |||| |||||| ||| |||||| | ||| | ||||||||||| | | ||||||||||||| Sbjct 132066 CGGGATGTAGCGTAGTTTGGTAAGCGCGTCTGCTTTGGGAGCAGAATGTCGCAGGTTCAA 132007 Query 148190 ATCCTGCCACCCCGAT 148205 ||||||||| |||||| Sbjct 132006 ATCCTGCCATCCCGAT 131991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549621596177240