Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq17 444 7e-120 >seq17 Length=139726 Score = 444 bits (492), Expect = 7e-120 Identities = 738/1041 (71%), Gaps = 50/1041 (5%) Strand=Plus/Plus Query 73374 TTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCA-TCGGATGGTCTGGTCTT--TTAC 73430 ||||||||||| |||| | ||||| || ||||| | | |||||||| ||| | |||| Sbjct 27241 TTGATGATTGGCTAAAACGTGATCGCTTTGTATTTAATTGGATGGTCAGGTTTGAATTAC 27300 Query 73431 TTTTACCTTGTGCTTA---CCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGA 73487 |||| |||||| | || |||||| | || | |||||| ||| || ||||| || | Sbjct 27301 TTTT-CCTTGTTCCTAAACCCTAGCCCTAGGCGCTTGGTTTACAGGTACAACTTT-GTTA 27358 Query 73488 CCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTG 73547 | || ||||| || |||||| | || || || ||| | || ||| ||||||| ||||| Sbjct 27359 CTTCTTGGTATACTCATGGTTTAGCTTCTTCTTATTTAGAAGGATGTAATTTTT-AACTG 27417 Query 73548 CAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAG 73607 | |||||||||| |||| || |||||| || || | || | |||||||||| Sbjct 27418 CTGCAGTATCAAGCCCTGCAAATAGTATGGGACACTCATTACTATTT-TATGGGGACCAG 27476 Query 73608 AGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCAT 73667 | || ||||| ||| || |||||| |||| | || || |||||| ||| ||| | Sbjct 27477 AAGCTCAAGGTGATTTTACTAGATGGTGTCAAATTGGAGGTTTATGGACATTTACAGCTT 27536 Query 73668 TACATGGAGTCTTTGGACTCA-TAGGTTTCATGCTTA-GACAGTTTGAGATTGCAGGACT 73725 ||||||| | |||||| | | ||||||| || ||| | || ||||| || ||| || | Sbjct 27537 TACATGGTGCTTTTGGAATTAATAGGTTT--TGTTTACGTCAATTTGAAATAGCAAGATT 27594 Query 73726 TGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAG 73785 || || || | || || || ||| |||||||||| | | || ||||| || Sbjct 27595 AGTAGGAATTAGACCATATAATGCAATAGCTTTTTCGGGACCAATTGCAGTTTTGTTT-- 27652 Query 73786 CA-TCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTG 73844 || | ||||| || ||||| | ||||| ||||||||| | || ||| || || | Sbjct 27653 CAGTATTTCTTATTTATCCACTTGGACAAGCTAGTTGGTTTT--GCTCCTAGTTTTGGAG 27710 Query 73845 TCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATC 73904 | ||||| |||||| | | ||||||||| | || || ||||| || ||| | |||| Sbjct 27711 TTGCAGCTATCTTTAGATTTATTTTATTT-TGCAAGGCTTCCATAACTGGACTTTAAATC 27769 Query 73905 CATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATG 73964 |||| |||||||||||||| || || |||||||||||||||||| | || || || |||| Sbjct 27770 CATTCCATATGATGGGTGTTGCTGGAATACTTGGTGGAGCATTATTGTGCGCTATTCATG 27829 Query 73965 GTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTC 74024 | ||||| ||| | || || || | ||||| || | |||| | Sbjct 27830 GAGCAACTGTAGAAAATACCTTATTTGAAG----ATGGC--------GAAGCT------- 27870 Query 74025 AATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTA 74084 ||| ||||||||||| || || ||||| |||||| |||||| ||| ||| Sbjct 27871 --GCTAATACTTTCAGAGCTTTTACACCAACACAATCAGAAGAAACTTATTCAATGGTTA 27928 Query 74085 CTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTAC 74144 | ||||| | || |||||||| || |||||| | || ||||| || ||||||| ||| Sbjct 27929 CAGCTAATCG-TTTTGGTCACAAAT-TTTGGTGTTGC-TTTTCTAATAAAAGATGGCTAC 27985 Query 74145 ACTTCCTT--ATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGT 74202 | ||| || ||| | || || || || | || | |||||| ||||| ||||| | Sbjct 27986 ATTTCTTTGAATGCTATTTGTGCCAGTTACTGGATTATGGACAAGTTCTATTGGTATTAT 28045 Query 74203 AGGTCTAGCACTTAACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAG 74261 ||| || ||| |||| ||| | ||||| || || || |||||||| || | || |||| Sbjct 28046 AGGACTTGCA-TTAAATTTACGTGCATATGATTTCGTTTCTCAAGAATTACGTGCCGCAG 28104 Query 74262 AAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAG 74321 | || ||||| ||||||||||| || ||||| || | || || ||||||||||| |||| Sbjct 28105 AGGATCCAGAATTTGAAACCTTTTATACTAAAAATTTACTCCTAAATGAAGGTATAAGAG 28164 Query 74322 CATGGATGTCATCTGTCGA-TCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTG 74380 |||||||| || | || |||||| ||||| || ||||| |||||||| || || || Sbjct 28165 CATGGATGGCAACACAAGATTCAACCACATGA-AAATTTGTATTCCCAGAGGAGGTTTTA 28223 Query 74381 CCACGAGGCAACGCACTATAA 74401 ||||| || || || || ||| Sbjct 28224 CCACGTGGAAATGCCCTTTAA 28244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572872762172360