Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Galdieria_20sulphuraria_20[genbank_20GCA_5F001704855.1_202016-08-14] 117 sequences; 12,093,695 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq58 105 6e-18 seq103 104 2e-17 seq77 100 3e-16 seq74 96.9 3e-15 seq36 96.9 3e-15 >seq58 Length=124683 Score = 105 bits (116), Expect = 6e-18 Identities = 142/196 (72%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || ||||| | ||||| || | ||||||| | |||| ||| Sbjct 62787 ACACTTACTGGCAAGACCATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAACGTA 62728 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || || || |||||||| || ||||| |||||||||||||| |||||||| ||||| Sbjct 62727 AAGTCCAAAATACAAGACAAGGAGGGAATTCCTCCCGATCAACAGCGTTTGATATTTGCA 62668 Query 24842 GGGAAACAGCTGGAGGA-TTCG----AGAAACATGTCAGATTATAACATTCAAAAGGAAT 24896 || || || |||| || ||| |||| | || || ||||| || |||||||||| Sbjct 62667 GGCAAGCAATTGGAAGAGCTCGTAGAAGAACTCTATCGGACTATAATATACAAAAGGAAT 62608 Query 24897 CGACACTACACTTGGT 24912 | || | |||||||| Sbjct 62607 CTACCTTGCACTTGGT 62592 >seq103 Length=203287 Score = 104 bits (114), Expect = 2e-17 Identities = 166/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGC-------TCGAAGTAGA 24756 ||||| || ||| | |||||| | || || || || | || || | || || || Sbjct 14396 ATGCAAATATTTGTGAAAACGTTGACAGGAAAGACCAGTAAGCCTAACGTTAGAGGTCGA 14337 Query 24757 AGCCACCGACACAGTAGAAACGGTAAAACAAAAGATC-CAAGACAAAGAAGGAATACCTC 24815 | | | || || |||||| || ||| |||||| ||||| |||||||| ||||| | Sbjct 14336 ACCTTCGGATACTATAGAAAATGTGAAATCAAAGATTTCAAGATAAAGAAGGTATACCCC 14277 Query 24816 CCGATCAACAACGTTTGATCTTTGCCGGGAAA--CAGCTGGAGGATTCGAGAAACATGTC 24873 | ||||||||| | | || ||||| |||||| || || || || |||| |||| Sbjct 14276 CTGATCAACAAAGGCTTATATTTGCTGGGAAATGCAACTCGAAGACGGAAGAACTCTGTC 14217 Query 24874 AGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||||| |||||||||||||| || | |||||||| ||| | || | ||||| Sbjct 14216 GGACTATAATATTCAAAAGGAATCCACGTTGCACTTGGTATTGAGGTTAAGGGGAGG 14160 >seq77 Length=161124 Score = 100 bits (110), Expect = 3e-16 Identities = 162/223 (73%), Gaps = 14/223 (6%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATT-ACGCTCGAAGTAGAAGCCAC 24762 ||||| || || | || || || || || || || ||| || || ||||| || || | Sbjct 114519 ATGCAAATATTCGTGAAGACTCTTACTGGGAAGACCATTTACTCTTGAAGTGGAGCCCTC 114460 Query 24763 CGACACAGTAGAAA--CGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 ||||| | |||| | ||| | || ||| |||||||| ||||| || || || || Sbjct 114459 AGACACTATTGAAAAACTTTAAGTCGAA-GATACAAGACAAGGAAGGTATTCCCCCAGAC 114401 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATGTC-AGAT 24877 |||||||||||||| ||||| ||||||||| ||||| || ||| || | || ||| Sbjct 114400 CAACAACGTTTGAT-TTTGCTGGGAAACAGTTGGAGCATGGTCG---TAC-TCTCGAGAC 114346 Query 24878 TATAACA--TTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||| |||||||||| || || || |||||||| || || Sbjct 114345 TACAACAGCTTCAAAAGGAGTCTACTCTTCACTTGGTCTTACG 114303 Score = 100 bits (110), Expect = 3e-16 Identities = 158/220 (72%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || || || || || || ||||| || ||||| || || | Sbjct 114751 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCATTACTCTTGAAGTGGAGCCCTCA 114692 Query 24764 GACACAGT--AGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 || || | |||| | || || ||||| |||||||| ||||| || || || || | Sbjct 114691 GATACTATTGAGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 114632 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGG-AGGATTCGAGAAACATGTC-AGATTA 24879 | ||||||||||| ||||| || |||||| ||| ||| | | || | || ||| || Sbjct 114631 AGCAACGTTTGATTTTTGCAGGTAAACAGTTGGAAGGTATGGTCGCAC-TCTCGAGACTA 114573 Query 24880 TAACA-TTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||| |||||||||| || || || |||||||| || || Sbjct 114572 CAACATTTCAAAAGGAGTCTACTCTCCACTTGGTCTTACG 114533 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 5/136 (4%) Strand=Plus/Minus Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG----AA 24846 || |||||||| ||||| || || || || || ||||||||||| ||||| || || Sbjct 113732 ATACAAGACAAGGAAGGTATTCCCCCAGACCAGCAACGTTTGAT-TTTGCATGGGAGTAA 113674 Query 24847 ACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACA 24906 |||| |||| ||| | | | ||||| || |||||||||||||| || || || || Sbjct 113673 ACAGTTGGAAGATGGTCGCACTCTCTCAGACTACAACATTCAAAAGGAGTCTACTCTTCA 113614 Query 24907 CTTGGTGTTGCGATTG 24922 |||||||||||| ||| Sbjct 113613 CTTGGTGTTGCGTTTG 113598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTC--GAAGTAGAAGCCA 24761 |||||||| || | || || || || || || || | | |||| ||||| || || Sbjct 114059 ATGCAGATATTCGTAAAGACTCTTACTGGGAAGACCAGTCAGCTCTTGAAGTGGAGCCCT 114000 Query 24762 CCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 | ||||| | ||| | || || ||||| |||||||| ||||| || || || || | Sbjct 113999 CAGACACTATTGAAGCTGTCAAGTCGAAGATACAAGACAAGGAAGGTATTCCCCCAGACC 113940 Query 24822 AACAACGTTTGATCTTTGC----CGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGAT 24877 | ||||||||||| ||||| ||||||||| |||| ||| | | | ||||| Sbjct 113939 AGCAACGTTTGAT-TTTGCAGCTTGGGAAACAGTTGGAAGATGGTCGTACTCTCTCAGAC 113881 Query 24878 TATAACA--TTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || |||| ||| |||||| || || || |||||||| || || Sbjct 113880 TACAACAGCTTC-AAAGGAGTCTACTCTTCACTTGGTCTTACG 113839 >seq74 Length=163707 Score = 96.9 bits (106), Expect = 3e-15 Identities = 114/149 (77%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 139105 ACTTCGTCGGGG-TCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGT 139163 ||||| ||||| ||| | |||| |||||||| | ||||||||||||||| ||||| Sbjct 151384 ACTTCTTCGGGACTCG-TATATTGAACAATTTCTGTACACAAATTACTACATCGTATCGT 151442 Query 139164 ACCTAAATTTTGTTG-ATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATAT-ACGGT 139221 || || |||||||| |||||| |||| | | ||| ||| ||||| | ||||| | || Sbjct 151443 TCCCAAGTTTTGTTGAATTGCTCTTTCTGATGCAATGATCCTTGTACAACATATAAGGGA 151502 Query 139222 GTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 |||||||||| | ||||| |||| ||| Sbjct 151503 TTGCCAGTTTCTATTTGTGCTTCTAAAAT 151531 >seq36 Length=139094 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTT-GATCTTTGCCGGGAA 24846 ||||| |||||||| |||||||| ||||| || || |||||||| ||| ||||| || || Sbjct 92339 AAGATACAAGACAAGGAAGGAATTCCTCCAGACCAGCAACGTTTTGATATTTGCTGGAAA 92280 Query 24847 ACAGCTG-GAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTAC 24905 || || || ||| | | | ||||| ||||| ||||||||||| || || || | Sbjct 92279 GCAACTTAGAAGATGGTCGTACTCTTTCAGACTATAATATTCAAAAGGAGTCTACCCTTC 92220 Query 24906 ACTTGGTGTTGCGATTG 24922 ||||||| ||||| ||| Sbjct 92219 ACTTGGTATTGCGTTTG 92203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896942024760